| An automated Design-Build-Test-Learn pipeline for enhanced microbial production of fine chemicals P Carbonell, AJ Jervis, CJ Robinson, C Yan, M Dunstan, N Swainston, ... Communications biology 1 (1), 66, 2018 | 238 | 2018 |
| Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data JA McMurry, N Juty, N Blomberg, T Burdett, T Conlin, N Conte, M Courtot, ... PLoS biology 15 (6), e2001414, 2017 | 151 | 2017 |
| Systematic construction of kinetic models from genome-scale metabolic networks NJ Stanford, T Lubitz, K Smallbone, E Klipp, P Mendes, W Liebermeister PloS one 8 (11), e79195, 2013 | 147 | 2013 |
| Further developments towards a genome-scale metabolic model of yeast PD Dobson, K Smallbone, D Jameson, E Simeonidis, K Lanthaler, P Pir, ... BMC systems biology 4, 1-7, 2010 | 144 | 2010 |
| SEEK: a systems biology data and model management platform K Wolstencroft, S Owen, O Krebs, Q Nguyen, NJ Stanford, M Golebiewski, ... BMC systems biology 9, 1-12, 2015 | 135 | 2015 |
| FAIRDOMHub: a repository and collaboration environment for sharing systems biology research K Wolstencroft, O Krebs, JL Snoep, NJ Stanford, F Bacall, M Golebiewski, ... Nucleic acids research 45 (D1), D404-D407, 2017 | 125 | 2017 |
| Physiological tolerance and stoichiometric potential of cyanobacteria for hydrocarbon fuel production J Kämäräinen, H Knoop, NJ Stanford, F Guerrero, MK Akhtar, EM Aro, ... Journal of biotechnology 162 (1), 67-74, 2012 | 74 | 2012 |
| Toward community standards and software for whole-cell modeling D Waltemath, JR Karr, FT Bergmann, V Chelliah, M Hucka, M Krantz, ... IEEE Transactions on Biomedical Engineering 63 (10), 2007-2014, 2016 | 65 | 2016 |
| The evolution of standards and data management practices in systems biology NJ Stanford, K Wolstencroft, M Golebiewski, R Kania, N Juty, C Tomlinson, ... Molecular systems biology 11 (12), 851, 2015 | 43 | 2015 |
| The Human Physiome: how standards, software and innovative service infrastructures are providing the building blocks to make it achievable D Nickerson, K Atalag, B De Bono, J Geiger, C Goble, S Hollmann, ... Interface Focus 6 (2), 20150103, 2016 | 32 | 2016 |
| RobOKoD: microbial strain design for (over) production of target compounds NJ Stanford, P Millard, N Swainston Frontiers in cell and developmental biology 3, 17, 2015 | 28 | 2015 |
| An automated Design-Build-Test-Learn pipeline for enhanced microbial production of fine chemicals. Communications biology. 2018; 1: 66 P Carbonell, AJ Jervis, CJ Robinson, C Yan, M Dunstan, N Swainston, ... Epub 2018/10/03. https://doi. org/10.1038/s42003-018-0076-9 PMID: 30271948, 0 | 12 | |
| Data management in computational systems biology: exploring standards, tools, databases, and packaging best practices NJ Stanford, M Scharm, PD Dobson, M Golebiewski, M Hucka, ... Yeast Systems Biology: Methods and Protocols, 285-314, 2019 | 7 | 2019 |
| Kinetic modeling of metabolic pathways: Application to serine biosynthesis K Smallbone, NJ Stanford Systems Metabolic Engineering: Methods and Protocols, 113-121, 2013 | 5 | 2013 |
| Kinetic modelling of large-scale metabolic networks P Mendes, NJ Stanford, K Smallbone Proceedings of the 9th International Conference on Computational Methods in …, 2011 | 4 | 2011 |
| FAIRDOM approach for semantic interoperability of systems biology data and models. O Krebs, K Wolstencroft, NJ Stanford, N Morrison, M Golebiewski, S Owen, ... ICBO, 2015 | 2 | 2015 |
| FAIRDOM: Reproducible Systems Biology through FAIR Asset Management N Stanford, F Bacall, M Golebiewski, O Krebs, R Kuzyakiv, Q Nguyen, ... Reproducibility, Standards and SOP in Bioinformatics: Combined CHARME–EMBnet …, 2016 | 1 | 2016 |
| Kinetic modelling of metabolic pathways NJ Stanford, K Smallbone The Bioinformatics Knowledgeblog, 2011 | 1 | 2011 |
| Towards a full genome-scale model of yeast metabolism NJ Stanford PQDT-UK & Ireland, 2011 | 1 | 2011 |
| FAIR Bioinformatics computation and data management: FAIRDOM and the Norwegian Digital Life initiative N Stanford, F Bacall, FZ Ghavidel, M Golebiewski, I Jonassen, R Kleppe, ... NETTAB 2018 Network Tools and Applications in Biology: Building a FAIR …, 2018 | | 2018 |
Pedro MendesUniversity of ConnecticutVerified email at uchc.edu
