Matthew Brian Couger
TitleCited byYear
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
BJ Haas, A Papanicolaou, M Yassour, M Grabherr, PD Blood, J Bowden, ...
Nature protocols 8 (8), 1494, 2013
35892013
Phylogenetic diversity and community structure of anaerobic gut fungi (phylum Neocallimastigomycota) in ruminant and non-ruminant herbivores
AS Liggenstoffer, NH Youssef, MB Couger, MS Elshahed
The ISME journal 4 (10), 1225-1235, 2010
1712010
A tissue-mapped axolotl de novo transcriptome enables identification of limb regeneration factors
DM Bryant, K Johnson, T DiTommaso, T Tickle, MB Couger, ...
Cell reports 18 (3), 762-776, 2017
1352017
The genome of the anaerobic fungus Orpinomyces sp. strain C1A reveals the unique evolutionary history of a remarkable plant biomass degrader
NH Youssef, MB Couger, CG Struchtemeyer, AS Liggenstoffer, RA Prade, ...
Appl. Environ. Microbiol. 79 (15), 4620-4634, 2013
1302013
Fine-scale bacterial beta diversity within a complex ecosystem (Zodletone Spring, OK, USA): the role of the rare biosphere
NH Youssef, MB Couger, MS Elshahed
PLoS one 5 (8), 2010
602010
Assessing the global phylum level diversity within the bacterial domain: a review
NH Youssef, MB Couger, AL McCully, AEG Criado, MS Elshahed
Journal of advanced research 6 (3), 269-282, 2015
502015
Transcriptomic analysis of lignocellulosic biomass degradation by the anaerobic fungal isolate Orpinomyces sp. strain C1A
MB Couger, NH Youssef, CG Struchtemeyer, AS Liggenstoffer, ...
Biotechnology for biofuels 8 (1), 208, 2015
372015
Penicillium echinulatum secretome analysis reveals the fungi potential for degradation of lignocellulosic biomass
WDH Schneider, TA Gonçalves, CA Uchima, MB Couger, R Prade, ...
Biotechnology for biofuels 9 (1), 66, 2016
272016
Genome sequences of the lignin-degrading Pseudomonas sp. strain YS-1p and Rhizobium sp. strain YS-1r isolated from decaying wood
M Prabhakaran, MB Couger, CA Jackson, T Weirick, BZ Fathepure
Genome Announc. 3 (2), e00019-15, 2015
192015
Genome Analysis of Staphylococcus agnetis, an Agent of Lameness in Broiler Chickens
AAK Al-Rubaye, MB Couger, S Ojha, JF Pummill, JA Koon, ...
PloS one 10 (11), e0143336, 2015
182015
Isolation and characterization of Rhizobium sp. strain YS‐1r that degrades lignin in plant biomass
CA Jackson, MB Couger, M Prabhakaran, KD Ramachandriya, P Canaan, ...
Journal of applied microbiology 122 (4), 940-952, 2017
162017
Research resource: the dexamethasone transcriptome in hypothalamic embryonic neural stem cells
KA Frahm, ME Peffer, JY Zhang, S Luthra, AB Chakka, MB Couger, ...
Molecular Endocrinology 30 (1), 144-154, 2016
152016
Myceliophthora thermophila M77 utilizes hydrolytic and oxidative mechanisms to deconstruct biomass
HB Dos Santos, TMS Bezerra, JGC Pradella, P Delabona, D Lima, ...
AMB Express 6 (1), 1-12, 2016
112016
Enabling large‐scale next‐generation sequence assembly with Blacklight
M Brian Couger, L Pipes, F Squina, R Prade, A Siepel, R Palermo, ...
Concurrency and Computation: Practice and Experience 26 (13), 2157-2166, 2014
92014
Thermal adaptation strategies of the extremophile bacterium Thermus filiformis based on multi-omics analysis
F Mandelli, MB Couger, DAA Paixão, CB Machado, CM Carnielli, ...
Extremophiles 21 (4), 775-788, 2017
82017
Draft genome sequence of Micrococcus luteus strain O'Kane implicates metabolic versatility and the potential to degrade polyhydroxybutyrates
RA Hanafy, MB Couger, K Baker, C Murphy, SD O'Kane, C Budd, ...
Genomics data 9, 148-153, 2016
72016
Draft genome sequence of the environmental isolate Chryseobacterium sp. Hurlbut01
MB Couger, A Hurlbut, CL Murphy, C Budd, DP French, WD Hoff, ...
Genome Announc. 3 (5), e01071-15, 2015
72015
Survival of the anaerobic fungus Orpinomyces sp. strain C1A after prolonged air exposure
CG Struchtemeyer, A Ranganathan, MB Couger, AS Liggenstoffer, ...
Scientific reports 4, 6892, 2014
72014
Horizontal gene transfer as an indispensable driver for evolution of Neocallimastigomycota into a distinct gut-dwelling fungal lineage
CL Murphy, NH Youssef, RA Hanafy, MB Couger, JE Stajich, Y Wang, ...
Applied and environmental microbiology 85 (15), e00988-19, 2019
62019
Development of an RNA interference (RNAi) gene knockdown protocol in the anaerobic gut fungus Pecoramyces ruminantium strain C1A
SS Calkins, NC Elledge, KE Mueller, SM Marek, MB Couger, ...
PeerJ 6, e4276, 2018
42018
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Articles 1–20