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Shahidul M. Islam
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CHARMM-GUI PDB manipulator for advanced modeling and simulations of proteins containing nonstandard residues
S Jo, X Cheng, SM Islam, L Huang, H Rui, A Zhu, HS Lee, Y Qi, W Han, ...
Advances in protein chemistry and structural biology 96, 235-265, 2014
2382014
Conformational dynamics of ligand-dependent alternating access in LeuT
K Kazmier, S Sharma, M Quick, SM Islam, B Roux, H Weinstein, ...
Nature structural & molecular biology 21 (5), 472-479, 2014
1412014
Cryo-EM structures of the magnesium channel CorA reveal symmetry break upon gating
D Matthies, O Dalmas, MJ Borgnia, PK Dominik, A Merk, P Rao, ...
Cell 164 (4), 747-756, 2016
1282016
Structural refinement from restrained-ensemble simulations based on EPR/DEER data: application to T4 lysozyme
SM Islam, RA Stein, HS Mchaourab, B Roux
The journal of physical chemistry B 117 (17), 4740-4754, 2013
1012013
Conformational cycle and ion-coupling mechanism of the Na+/hydantoin transporter Mhp1
K Kazmier, S Sharma, SM Islam, B Roux, HS Mchaourab
Proceedings of the National Academy of Sciences 111 (41), 14752-14757, 2014
882014
Restrained-ensemble molecular dynamics simulations based on distance histograms from double electron–electron resonance spectroscopy
B Roux, SM Islam
The Journal of Physical Chemistry B 117 (17), 4733-4739, 2013
742013
Simulating the distance distribution between spin-labels attached to proteins
SM Islam, B Roux
The Journal of Physical Chemistry B 119 (10), 3901-3911, 2015
562015
Dynamics transitions at the outer vestibule of the KcsA potassium channel during gating
H Raghuraman, SM Islam, S Mukherjee, B Roux, E Perozo
Proceedings of the National Academy of Sciences 111 (5), 1831-1836, 2014
562014
Synthesis of allylic alcohols via Cu-catalyzed hydrocarbonylative coupling of alkynes with alkyl halides
LJ Cheng, SM Islam, NP Mankad
Journal of the American Chemical Society 140 (3), 1159-1164, 2018
552018
Cooperative heterobimetallic substrate activation enhances catalytic activity and amplifies regioselectivity in 1, 4-hydroboration of pyridines
HC Yu, SM Islam, NP Mankad
ACS Catalysis 10 (6), 3670-3675, 2020
502020
An in Silico Approach for Identification of Novel Inhibitors as Potential Therapeutics Targeting COVID-19 Main Protease
B Havrenick, SM Islam
Journal of Biomolecular Structure and Dynamics, 2020
432020
Viscosity and excess viscosity of dilute aqueous solutions of ethylenediamine, trimethylenediamine and N, N-dimethyltrimethylenediamine
MA Saleh, MS Ahmed, MS Islam
Physics and Chemistry of Liquids 40 (4), 477-490, 2002
402002
Structural refinement of proteins by restrained molecular dynamics simulations with non-interacting molecular fragments
R Shen, W Han, G Fiorin, SM Islam, K Schulten, B Roux
PLoS computational biology 11 (10), e1004368, 2015
312015
Performance of the SCC-DFTB model for description of five-membered ring carbohydrate conformations: comparison to force fields, high-level electronic structure methods, and …
SM Islam, PN Roy
Journal of chemical theory and computation 8 (7), 2412-2423, 2012
312012
Synthesis of Spirocyclic 1‐Pyrrolines from Nitrones and Arynes through a Dearomative [3, 3′]‐Sigmatropic Rearrangement
AS Alshreimi, G Zhang, TW Reidl, RL Peña, NG Koto, SM Islam, DJ Wink, ...
Angewandte Chemie International Edition 59 (35), 15244-15248, 2020
282020
Comparison of the standard 6-31G and binning-curtiss basis sets for third row elements
SM Islam, SD Huelin, M Dawe, RA Poirier
Journal of Chemical Theory and Computation 4 (1), 86-100, 2008
282008
A New Insight into Using Chlorine Leaving Group and Nucleophile Carbon Kinetic Isotope Effects To Determine Substituent Effects on the Structure of SN2 …
KC Westaway, Y Fang, S MacMillar, O Matsson, RA Poirier, SM Islam
The Journal of Physical Chemistry A 111 (33), 8110-8120, 2007
282007
Conformational analysis of oligoarabinofuranosides: Overcoming torsional barriers with umbrella sampling
SM Islam, MR Richards, HA Taha, SC Byrns, TL Lowary, PN Roy
Journal of Chemical Theory and Computation 7 (9), 2989-3000, 2011
262011
CHARMM‐GUI DEER facilitator for spin‐pair distance distribution calculations and preparation of restrained‐ensemble molecular dynamics simulations
Y Qi, J Lee, X Cheng, R Shen, SM Islam, B Roux, W Im
Journal of Computational Chemistry 41 (5), 415-420, 2020
252020
New Insights into the Bromination Reaction for a Series of Alkenes A Computational Study
SM Islam, RA Poirier
The Journal of Physical Chemistry A 111 (50), 13218-13232, 2007
232007
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