Mikel Hernaez
Mikel Hernaez
Carl R. Woese Institute for Genomic Biology, University of Illinois
Email verificata su illinois.edu - Home page
Titolo
Citata da
Citata da
Anno
Effect of lossy compression of quality scores on variant calling
I Ochoa, M Hernaez, R Goldfeder, T Weissman, E Ashley
Briefings in bioinformatics 18 (2), 183-194, 2017
592017
QVZ: lossy compression of quality values
G Malysa, M Hernaez, I Ochoa, M Rao, K Ganesan, T Weissman
Bioinformatics 31 (19), 3122-3129, 2015
592015
iDoComp: a compression scheme for assembled genomes
I Ochoa, M Hernaez, T Weissman
Bioinformatics 31 (5), 626-633, 2015
302015
FaStore: a space-saving solution for raw sequencing data
Ł Roguski, I Ochoa, M Hernaez, S Deorowicz
Bioinformatics 34 (16), 2748-2756, 2018
272018
SPRING: a next-generation compressor for FASTQ data
S Chandak, K Tatwawadi, I Ochoa, M Hernaez, T Weissman
Bioinformatics 35 (15), 2674-2676, 2019
222019
CALQ: compression of quality values of aligned sequencing data
J Voges, J Ostermann, M Hernaez
Bioinformatics 34 (10), 1650-1658, 2018
162018
On the design of a novel joint network-channel coding scheme for the multiple access relay channel
M Hernaez, PM Crespo, J Del Ser
IEEE Journal on Selected Areas in Communications 31 (8), 1368-1378, 2012
152012
An evaluation framework for lossy compression of genome sequencing quality values
C Alberti, N Daniels, M Hernaez, J Voges, RL Goldfeder, ...
2016 Data Compression Conference (DCC), 221-230, 2016
142016
A cluster-based approach to compression of quality scores
M Hernaez, I Ochoa, T Weissman
2016 Data Compression Conference (DCC), 261-270, 2016
142016
Aligned genomic data compression via improved modeling
I Ochoa, M Hernaez, T Weissman
Journal of bioinformatics and computational biology 12 (06), 1442002, 2014
132014
Sentieon DNASeq variant calling workflow demonstrates strong computational performance and accuracy
KI Kendig, S Baheti, MA Bockol, TM Drucker, SN Hart, JR Heldenbrand, ...
Frontiers in genetics 10, 2019
12*2019
GTRAC: fast retrieval from compressed collections of genomic variants
K Tatwawadi, M Hernaez, I Ochoa, T Weissman
Bioinformatics 32 (17), i479-i486, 2016
122016
Genomic data compression
M Hernaez, D Pavlichin, T Weissman, I Ochoa
Annual Review of Biomedical Data Science 2, 19-37, 2019
102019
LDPC codes for non-uniform memoryless sources and unequal energy allocation
I Ochoa, PM Crespo, M Hernaez
IEEE communications letters 14 (9), 794-796, 2010
102010
An introduction to MPEG-G, the new ISO standard for genomic information representation
C Albert, T Paridaens, J Voges, D Naro, JJ Ahmad, M Ravasi, D Renzi, ...
bioRxiv, 426353, 2018
92018
Joint non-binary LDPC-BICM and network coding with iterative decoding for the multiple access relay channel
M Hernaez, PM Crespo, J Del Ser
2011 IEEE 73rd Vehicular Technology Conference (VTC Spring), 1-5, 2011
92011
Flexible channel coding approach for short-length codewords
M Hernaez, PM Crespo, J Del Ser
IEEE communications letters 16 (9), 1508-1511, 2012
62012
Serially-concatenated LDGM codes for correlated sources over Gaussian broadcast channels
M Hernaez, P Crespo, J Del Ser, J Garcia-Frias
IEEE communications letters 13 (10), 788-790, 2009
62009
Cell-type specific polysome profiling from mammalian tissues
J Seimetz, W Arif, S Bangru, M Hernaez, A Kalsotra
Methods 155, 131-139, 2019
52019
GeneComp, a new reference-based compressor for SAM files
R Long, M Hernaez, I Ochoa, T Weissman
2017 Data Compression Conference (DCC), 330-339, 2017
52017
Il sistema al momento non pu eseguire l'operazione. Riprova pi tardi.
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