Niina Haiminen
Niina Haiminen
IBM Research
Verified email at us.ibm.com - Homepage
Title
Cited by
Cited by
Year
The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color
JC Motamayor, K Mockaitis, J Schmutz, N Haiminen, D Livingstone III, ...
Genome biology 14 (6), 1-25, 2013
1942013
Segmentation and dimensionality reduction
E Bingham, A Gionis, N Haiminen, H Hiisilš, H Mannila, E Terzi
Proceedings of the 2006 SIAM International Conference on Data Mining, 372-383, 2006
462006
GenomicTools: a computational platform for developing high-throughput analytics in genomics
A Tsirigos, N Haiminen, E Bilal, F Utro
Bioinformatics 28 (2), 282-283, 2012
422012
Evaluation of methods for de novo genome assembly from high-throughput sequencing reads reveals dependencies that affect the quality of the results
N Haiminen, DN Kuhn, L Parida, I Rigoutsos
PloS one 6 (9), e24182, 2011
382011
Randomization methods for assessing data analysis results on real‐valued matrices
M Ojala, N Vuokko, A Kallio, N Haiminen, H Mannila
Statistical Analysis and Data Mining: The ASA Data Science Journal 2 (4†…, 2009
252009
Comparing segmentations by applying randomization techniques
N Haiminen, H Mannila, E Terzi
BMC bioinformatics 8 (1), 171, 2007
232007
Randomization of real-valued matrices for assessing the significance of data mining results
M Ojala, N Vuokko, A Kallio, N Haiminen, H Mannila
Proceedings of the 2008 SIAM International Conference on Data Mining, 494-505, 2008
222008
Discovering isochores by least-squares optimal segmentation
N Haiminen, H Mannila
Gene 394 (1-2), 53-60, 2007
202007
Unimodal segmentation of sequences
N Haiminen, A Gionis
Fourth IEEE International Conference on Data Mining (ICDM'04), 106-113, 2004
202004
Determining significance of pairwise co-occurrences of events in bursty sequences
N Haiminen, H Mannila, E Terzi
BMC bioinformatics 9 (1), 336, 2008
192008
Assessing pooled BAC and whole genome shotgun strategies for assembly of complex genomes
N Haiminen, FA Feltus, L Parida
BMC genomics 12 (1), 194, 2011
172011
Sequencing of a QTL-rich region of the Theobroma cacao genome using pooled BACs and the identification of trait specific candidate genes
FA Feltus, CA Saski, K Mockaitis, N Haiminen, L Parida, Z Smith, J Ford, ...
BMC genomics 12 (1), 379, 2011
162011
Randomization techniques for assessing the significance of gene periodicity results
A Kallio, N Vuokko, M Ojala, N Haiminen, H Mannila
BMC bioinformatics 12 (1), 330, 2011
132011
Application of genome wide association and genomic prediction for improvement of cacao productivity and resistance to black and frosty pod diseases
JA Romero Navarro, W Phillips-Mora, A Arciniegas-Leal, A Mata-Quirůs, ...
Frontiers in Plant Science 8, 1905, 2017
112017
Comparative exomics of Phalariscultivars under salt stress
N Haiminen, M Klaas, Z Zhou, F Utro, P Cormican, T Didion, CS Jensen, ...
BMC genomics 15 (S6), S18, 2014
102014
iXora: exact haplotype inferencing and trait association
F Utro, N Haiminen, D Livingstone, OE Cornejo, S Royaert, RJ Schnell, ...
BMC genetics 14 (1), 48, 2013
102013
Algorithms for unimodal segmentation with applications to unimodality detection
N Haiminen, A Gionis, K Laasonen
Knowledge and information systems 14 (1), 39-57, 2008
102008
Detecting novel genes with sparse arrays
M Arvas, N Haiminen, B Smit, J Rautio, M Vitikainen, M Wiebe, D Martinez, ...
Gene 467 (1-2), 41-51, 2010
92010
Design of the MCAW compute service for food safety bioinformatics
SB Edlund, KL Beck, N Haiminen, LP Parida, DB Storey, BC Weimer, ...
IBM Journal of Research and Development 60 (5/6), 2: 1-2: 12, 2016
82016
BAC sequencing using pooled methods
CA Saski, FA Feltus, L Parida, N Haiminen
Bacterial artificial chromosomes, 55-67, 2015
82015
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Articles 1–20