Mathieu Almeida
Mathieu Almeida
Research Fellow at INRA MetaGenoPolis, France
Verified email at
Cited by
Cited by
Enterotypes of the human gut microbiome.
DJ Arumugam M, Raes J, Pelletier E, Le Paslier D, ...
Nature 473 (7346), 174-180, 2011
A metagenome-wide association study of gut microbiota in type 2 diabetes
J Qin, Y Li, Z Cai, S Li, J Zhu, F Zhang, S Liang, W Zhang, Y Guan, ...
Nature, 2012
Richness of human gut microbiome correlates with metabolic markers
E Le Chatelier, T Nielsen, J Qin, E Prifti, F Hildebrand, G Falony, ...
Nature 500 (7464), 541-546, 2013
Dietary intervention impact on gut microbial gene richness
A Cotillard, SP Kennedy, LC Kong, E Prifti, N Pons, E Le Chatelier, ...
Nature 500 (7464), 585-588, 2013
Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota
K Forslund, F Hildebrand, T Nielsen, G Falony, E Le Chatelier, ...
Nature 528 (7581), 262, 2015
Akkermansia muciniphila and improved metabolic health during a dietary intervention in obesity: relationship with gut microbiome richness and ecology
MC Dao, A Everard, J Aron-Wisnewsky, N Sokolovska, E Prifti, EO Verger, ...
Gut 65 (3), 426-436, 2016
Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes
HB Nielsen, M Almeida, AS Juncker, S Rasmussen, J Li, S Sunagawa, ...
Nature biotechnology 32 (8), 822-828, 2014
Microbial ecology perturbation in human IgA deficiency
J Fadlallah, H El Kafsi, D Sterlin, C Juste, C Parizot, K Dorgham, G Autaa, ...
Science translational medicine 10 (439), 2018
Construction of a dairy microbial genome catalog opens new perspectives for the metagenomic analysis of dairy fermented products
M Almeida, A Hébert, AL Abraham, S Rasmussen, C Monnet, N Pons, ...
BMC genomics 15 (1), 1101, 2014
Complete genome sequence of the pigmented Streptococcus thermophilus strain JIM8232
C Delorme, C Bartholini, M Luraschi, N Pons, V Loux, M Almeida, ...
Journal of bacteriology 193 (19), 5581-5582, 2011
MSPminer: abundance-based reconstitution of microbial pan-genomes from shotgun metagenomic data
F Plaza Oñate, E Le Chatelier, M Almeida, ACL Cervino, F Gauthier, ...
Bioinformatics 35 (9), 1544-1552, 2019
Complete genome sequence of the commensal Streptococcus salivarius strain JIM8777
E Guédon, C Delorme, N Pons, C Cruaud, V Loux, A Couloux, C Gautier, ...
Journal of bacteriology 193 (18), 5024-5025, 2011
Genetic Characterization of Vibrio cholerae O1 isolates from outbreaks between 2011 and 2015 in Tanzania
Y Kachwamba, AA Mohammed, H Lukupulo, L Urio, M Majigo, F Mosha, ...
BMC infectious diseases 17 (1), 1-6, 2017
Minimal genetic change in Vibrio cholerae in Mozambique over time: Multilocus variable number tandem repeat analysis and whole genome sequencing
M Garrine, I Mandomando, D Vubil, T Nhampossa, S Acacio, S Li, ...
PLOS Neglected Tropical Diseases 11 (6), e0005671, 2017
Direct detection of Shigella in stool specimens by use of a metagenomic approach
J Liu, M Almeida, F Kabir, S Shakoor, S Qureshi, A Zaidi, S Li, ...
Journal of clinical microbiology 56 (2), 2018
Molecular characterization of Vibrio cholerae responsible for cholera epidemics in Uganda by PCR, MLVA and WGS
G Bwire, DA Sack, M Almeida, S Li, JB Voeglein, AK Debes, A Kagirita, ...
PLoS neglected tropical diseases 12 (6), e0006492, 2018
Metagenomics for Microbiology: High Throughput Sequencing as a Tool for Exploring the Human Microbiome
J Izard, M Rivera
Academic Press, 2014
Comparison of inferred relatedness based on multilocus variable-number tandem-repeat analysis and whole genome sequencing of Vibrio cholerae O1
M Rashid, M Almeida, AS Azman, BR Lindsay, DA Sack, RR Colwell, ...
FEMS microbiology letters 363 (12), 2016
Complete genome sequence of the clinical Streptococcus salivarius strain CCHSS3
C Delorme, E Guédon, N Pons, C Cruaud, A Couloux, V Loux, ...
Journal of bacteriology 193 (18), 5041-5042, 2011
Capturing the most wanted taxa through cross-sample correlations
M Almeida, M Pop, E Le Chatelier, E Prifti, N Pons, A Ghozlane, ...
The ISME journal 10 (10), 2459-2467, 2016
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