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| A metagenome-wide association study of gut microbiota in type 2 diabetes J Qin, Y Li, Z Cai, S Li, J Zhu, F Zhang, S Liang, W Zhang, Y Guan, ... Nature, 2012 | 3831 | 2012 |
| Richness of human gut microbiome correlates with metabolic markers E Le Chatelier, T Nielsen, J Qin, E Prifti, F Hildebrand, G Falony, ... Nature 500 (7464), 541-546, 2013 | 2604 | 2013 |
| Dietary intervention impact on gut microbial gene richness A Cotillard, SP Kennedy, LC Kong, E Prifti, N Pons, E Le Chatelier, ... Nature 500 (7464), 585-588, 2013 | 1245 | 2013 |
| Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota K Forslund, F Hildebrand, T Nielsen, G Falony, E Le Chatelier, ... Nature 528 (7581), 262, 2015 | 953 | 2015 |
| Akkermansia muciniphila and improved metabolic health during a dietary intervention in obesity: relationship with gut microbiome richness and ecology MC Dao, A Everard, J Aron-Wisnewsky, N Sokolovska, E Prifti, EO Verger, ... Gut 65 (3), 426-436, 2016 | 798 | 2016 |
| Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes HB Nielsen, M Almeida, AS Juncker, S Rasmussen, J Li, S Sunagawa, ... Nature biotechnology 32 (8), 822-828, 2014 | 591 | 2014 |
| Microbial ecology perturbation in human IgA deficiency J Fadlallah, H El Kafsi, D Sterlin, C Juste, C Parizot, K Dorgham, G Autaa, ... Science translational medicine 10 (439), 2018 | 87 | 2018 |
| Construction of a dairy microbial genome catalog opens new perspectives for the metagenomic analysis of dairy fermented products M Almeida, A Hébert, AL Abraham, S Rasmussen, C Monnet, N Pons, ... BMC genomics 15 (1), 1101, 2014 | 61 | 2014 |
| Complete genome sequence of the pigmented Streptococcus thermophilus strain JIM8232 C Delorme, C Bartholini, M Luraschi, N Pons, V Loux, M Almeida, ... Journal of bacteriology 193 (19), 5581-5582, 2011 | 35 | 2011 |
| MSPminer: abundance-based reconstitution of microbial pan-genomes from shotgun metagenomic data F Plaza Oñate, E Le Chatelier, M Almeida, ACL Cervino, F Gauthier, ... Bioinformatics 35 (9), 1544-1552, 2019 | 23 | 2019 |
| Complete genome sequence of the commensal Streptococcus salivarius strain JIM8777 E Guédon, C Delorme, N Pons, C Cruaud, V Loux, A Couloux, C Gautier, ... Journal of bacteriology 193 (18), 5024-5025, 2011 | 22 | 2011 |
| Genetic Characterization of Vibrio cholerae O1 isolates from outbreaks between 2011 and 2015 in Tanzania Y Kachwamba, AA Mohammed, H Lukupulo, L Urio, M Majigo, F Mosha, ... BMC infectious diseases 17 (1), 1-6, 2017 | 19 | 2017 |
| Minimal genetic change in Vibrio cholerae in Mozambique over time: Multilocus variable number tandem repeat analysis and whole genome sequencing M Garrine, I Mandomando, D Vubil, T Nhampossa, S Acacio, S Li, ... PLOS Neglected Tropical Diseases 11 (6), e0005671, 2017 | 19 | 2017 |
| Molecular characterization of Vibrio cholerae responsible for cholera epidemics in Uganda by PCR, MLVA and WGS G Bwire, DA Sack, M Almeida, S Li, JB Voeglein, AK Debes, A Kagirita, ... PLoS neglected tropical diseases 12 (6), e0006492, 2018 | 15 | 2018 |
| Direct detection of Shigella in stool specimens by use of a metagenomic approach J Liu, M Almeida, F Kabir, S Shakoor, S Qureshi, A Zaidi, S Li, ... Journal of clinical microbiology 56 (2), 2018 | 15 | 2018 |
| Metagenomics for Microbiology: High Throughput Sequencing as a Tool for Exploring the Human Microbiome J Izard, M Rivera Academic Press, 2014 | 13 | 2014 |
| Comparison of inferred relatedness based on multilocus variable-number tandem-repeat analysis and whole genome sequencing of Vibrio cholerae O1 M Rashid, M Almeida, AS Azman, BR Lindsay, DA Sack, RR Colwell, ... FEMS microbiology letters 363 (12), 2016 | 12 | 2016 |
| Capturing the most wanted taxa through cross-sample correlations M Almeida, M Pop, E Le Chatelier, E Prifti, N Pons, A Ghozlane, ... The ISME journal 10 (10), 2459-2467, 2016 | 11 | 2016 |
| Complete genome sequence of the clinical Streptococcus salivarius strain CCHSS3 C Delorme, E Guédon, N Pons, C Cruaud, A Couloux, V Loux, ... Journal of bacteriology 193 (18), 5041-5042, 2011 | 11 | 2011 |
Nicolas PonsResearch Engineer in BioinformaticsVerified email at inrae.fr
