| Clonal replacement of tumor-specific T cells following PD-1 blockade KE Yost*, AT Satpathy*, DK Wells, Y Qi, C Wang, R Kageyama, ... bioRxiv, 648899, 2019 | 1092 | 2019 |
| The chromatin accessibility landscape of primary human cancers MR Corces*, JM Granja*, S Shams, BH Louie, JA Seoane, W Zhou, ... Science 362 (6413), eaav1898, 2018 | 933 | 2018 |
| Massively parallel single-cell chromatin landscapes of human immune cell development and intratumoral T cell exhaustion AT Satpathy*, JM Granja*, KE Yost, Y Qi, F Meschi, GP McDermott, ... Nature biotechnology, 610550, 2019 | 665 | 2019 |
| ArchR is a scalable software package for integrative single-cell chromatin accessibility analysis JM Granja*, MR Corces*, SE Pierce, ST Bagdatli, H Choudhry, HY Chang, ... Nature genetics 53 (3), 403-411, 2021 | 664 | 2021 |
| c-Jun overexpression in CAR T cells induces exhaustion resistance RC Lynn, EW Weber, E Sotillo, D Gennert, P Xu, Z Good, H Anbunathan, ... Nature 576 (7786), 293-300, 2019 | 559 | 2019 |
| Enhancer connectome in primary human cells identifies target genes of disease-associated DNA elements MR Mumbach*, AT Satpathy*, EA Boyle*, C Dai*, BG Gowen, SW Cho, ... Nature genetics 49 (11), 1602, 2017 | 448 | 2017 |
| Circular ecDNA promotes accessible chromatin and high oncogene expression S Wu, KM Turner, N Nguyen, R Raviram, M Erb, J Santini, J Luebeck, ... Nature 575 (7784), 699-703, 2019 | 385 | 2019 |
| Single-cell multiomic analysis identifies regulatory programs in mixed-phenotype acute leukemia JM Granja*, S Klemm*, LM McGinnis*, AS Kathiria, A Mezger, MR Corces, ... Nature biotechnology 37 (12), 1458-1465, 2019 | 334 | 2019 |
| Single-cell epigenomic analyses implicate candidate causal variants at inherited risk loci for Alzheimer’s and Parkinson’s diseases MR Corces, A Shcherbina, S Kundu, MJ Gloudemans, L Frésard, ... Nature genetics 52 (11), 1158-1168, 2020 | 231 | 2020 |
| Entropy in molecular recognition by proteins JA Caro*, KW Harpole*, V Kasinath*, J Lim*, J Granja, KG Valentine, ... Proceedings of the National Academy of Sciences 114 (25), 6563-6568, 2017 | 157 | 2017 |
| ecDNA hubs drive cooperative intermolecular oncogene expression KL Hung, KE Yost, L Xie, Q Shi, K Helmsauer, J Luebeck, R Schöpflin, ... Nature 600 (7890), 731-736, 2021 | 141 | 2021 |
| Intertumoral heterogeneity in SCLC is influenced by the cell type of origin D Yang, SK Denny, PG Greenside, AC Chaikovsky, JJ Brady, Y Ouadah, ... Cancer discovery 8 (10), 1316-1331, 2018 | 125 | 2018 |
| Transcript-indexed ATAC-seq for precision immune profiling AT Satpathy*, N Saligrama*, JD Buenrostro*, Y Wei, B Wu, AJ Rubin, ... Nature medicine 24 (5), 580, 2018 | 123 | 2018 |
| GWAS for systemic sclerosis identifies multiple risk loci and highlights fibrotic and vasculopathy pathways E López-Isac, M Acosta-Herrera, M Kerick, S Assassi, AT Satpathy, ... Nature communications 10 (1), 4955, 2019 | 118 | 2019 |
| Cryptic activation of an Irf8 enhancer governs cDC1 fate specification V Durai, P Bagadia, JM Granja, AT Satpathy, DH Kulkarni, JT Davidson IV, ... Nature immunology 20 (9), 1161-1173, 2019 | 116 | 2019 |
| An Nfil3–Zeb2–Id2 pathway imposes Irf8 enhancer switching during cDC1 development P Bagadia, X Huang, TT Liu, V Durai, GE Grajales-Reyes, M Nitschké, ... Nature immunology 20 (9), 1174-1185, 2019 | 95 | 2019 |
| High-throughput single-cell chromatin accessibility CRISPR screens enable unbiased identification of regulatory networks in cancer SE Pierce, JM Granja, WJ Greenleaf Nature communications 12 (1), 2969, 2021 | 93 | 2021 |
| HiChIRP reveals RNA-associated chromosome conformation MR Mumbach*, JM Granja*, RA Flynn, CM Roake, AT Satpathy, AJ Rubin, ... Nature methods, 1, 2019 | 76 | 2019 |
| Polycomb-mediated genome architecture enables long-range spreading of H3K27 methylation K Kraft, KE Yost, SE Murphy, A Magg, Y Long, MR Corces, JM Granja, ... Proceedings of the National Academy of Sciences 119 (22), e2201883119, 2022 | 45 | 2022 |
| Dynamic chromatin regulatory landscape of human CAR T cell exhaustion DG Gennert, RC Lynn, JM Granja, EW Weber, MR Mumbach, Y Zhao, ... Proceedings of the National Academy of Sciences 118 (30), e2104758118, 2021 | 42 | 2021 |
Howard Y. ChangStanford UniversityVerified email at stanford.edu
