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Iddo Friedberg
Iddo Friedberg
Associate Professor of Bioinformatics, Iowa State University
Verified email at iastate.edu - Homepage
Title
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Cited by
Year
Biopython: freely available Python tools for computational molecular biology and bioinformatics
PJA Cock, T Antao, JT Chang, BA Chapman, CJ Cox, A Dalke, I Friedberg, ...
Bioinformatics 25 (11), 1422-1423, 2009
34362009
Protein tyrosine phosphatases in the human genome
A Alonso, J Sasin, N Bottini, I Friedberg, I Friedberg, A Osterman, ...
Cell 117 (6), 699-711, 2004
21982004
A large-scale evaluation of computational protein function prediction
P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ...
Nature methods 10 (3), 221-227, 2013
8722013
A primer on metagenomics
JC Wooley, A Godzik, I Friedberg
PLoS computational biology 6 (2), e1000667, 2010
8422010
Automated protein function prediction—the genomic challenge
I Friedberg
Briefings in bioinformatics 7 (3), 225-242, 2006
4722006
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Y Jiang, TR Oron, WT Clark, AR Bankapur, DD Andrea, R Lepore, ...
Genome Biology 17 (184), 2016
3322016
A metagenomic study of diet-dependent interaction between gut microbiota and host in infants reveals differences in immune response
S Schwartz, I Friedberg, IV Ivanov, LA Davidson, JS Goldsby, DB Dahl, ...
Genome biology 13 (4), 1-16, 2012
2592012
Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity.
HGF Pope WH, Bowman CA, Russell DA, Jacobs-Sera D, Asai DJ, Cresawn SG ...
eLife 4, e06416, 2015
2242015
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ...
Genome biology 20 (1), 1-23, 2019
2042019
Submitochondrial distribution of three key steroidogenic proteins (steroidogenic acute regulatory protein and cytochrome P450scc and 3β-hydroxysteroid dehydrogenase isomerase …
N Cherradi, MF Rossier, MB Vallotton, R Timberg, I Friedberg, J Orly, ...
Journal of Biological Chemistry 272 (12), 7899-7907, 1997
1901997
Biases in the experimental annotations of protein function and their effect on our understanding of protein function space
AM Schnoes, DC Ream, AW Thorman, PC Babbitt, I Friedberg
PLoS computational biology 9 (5), e1003063, 2013
1192013
Host-microbe interactions in the neonatal intestine: role of human milk oligosaccharides
SM Donovan, M Wang, M Li, I Friedberg, SL Schwartz, RS Chapkin
Advances in Nutrition 3 (3), 450S-455S, 2012
1102012
Maize GO annotation—methods, evaluation, and review (maize‐GAMER)
K Wimalanathan, I Friedberg, CM Andorf, CJ Lawrence‐Dill
Plant direct 2 (4), e00052, 2018
772018
Connecting the protein structure universe by using sparse recurring fragments
I Friedberg, A Godzik
Structure 13 (8), 1213-1224, 2005
762005
Protist diversity in a permanently ice-covered Antarctic lake during the polar night transition
S Bielewicz, E Bell, W Kong, I Friedberg, JC Priscu, RM Morgan-Kiss
The ISME journal 5 (9), 1559-1564, 2011
732011
Persistently conserved positions in structurally similar, sequence dissimilar proteins: roles in preserving protein fold and function
I Friedberg, H Margalit
Protein Science 11 (2), 350-360, 2002
732002
Identifying Antimicrobial Peptides using Word Embedding with Deep Recurrent Neural Networks
MN Hamid, I Friedberg
Bioinformatics (OUP), 2018
672018
Computational protein function prediction: are we making progress?
A Godzik, M Jambon, I Friedberg
Cellular and molecular life sciences 64 (19), 2505-2511, 2007
672007
The COMBREX project: design, methodology, and initial results
BP Anton, YC Chang, P Brown, HP Choi, LL Faller, J Guleria, Z Hu, ...
PLoS biology 11 (8), e1001638, 2013
652013
Using an alignment of fragment strings for comparing protein structures
I Friedberg, T Harder, R Kolodny, E Sitbon, Z Li, A Godzik
Bioinformatics 23 (2), e219-e224, 2007
552007
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Articles 1–20