Iddo Friedberg
Iddo Friedberg
Associate Professor of Bioinformatics, Iowa State University
Email verificata su - Home page
Citata da
Citata da
Biopython: freely available Python tools for computational molecular biology and bioinformatics
PJA Cock, T Antao, JT Chang, BA Chapman, CJ Cox, A Dalke, I Friedberg, ...
Bioinformatics 25 (11), 1422-1423, 2009
Protein tyrosine phosphatases in the human genome
A Alonso, J Sasin, N Bottini, I Friedberg, I Friedberg, A Osterman, ...
Cell 117 (6), 699-711, 2004
A primer on metagenomics
JC Wooley, A Godzik, I Friedberg
PLoS Comput Biol 6 (2), e1000667, 2010
A large-scale evaluation of computational protein function prediction
P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ...
Nature methods 10 (3), 221-227, 2013
Automated protein function prediction—the genomic challenge
I Friedberg
Briefings in bioinformatics 7 (3), 225-242, 2006
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Y Jiang, TR Oron, WT Clark, AR Bankapur, DD Andrea, R Lepore, ...
Genome Biology 17 (184), 2016
A metagenomic study of diet-dependent interaction between gut microbiota and host in infants reveals differences in immune response
S Schwartz, I Friedberg, IV Ivanov, LA Davidson, JS Goldsby, DB Dahl, ...
Genome biology 13 (4), r32, 2012
Submitochondrial distribution of three key steroidogenic proteins (steroidogenic acute regulatory protein and cytochrome P450scc and 3β-hydroxysteroid dehydrogenase isomerase …
N Cherradi, MF Rossier, MB Vallotton, R Timberg, I Friedberg, J Orly, ...
Journal of Biological Chemistry 272 (12), 7899-7907, 1997
Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity.
HGF Pope WH, Bowman CA, Russell DA, Jacobs-Sera D, Asai DJ, Cresawn SG ...
eLife 4, e06416, 2015
Biases in the experimental annotations of protein function and their effect on our understanding of protein function space
AM Schnoes, DC Ream, AW Thorman, PC Babbitt, I Friedberg
PLoS computational biology 9 (5), 2013
Host-microbe interactions in the neonatal intestine: role of human milk oligosaccharides
SM Donovan, M Wang, M Li, I Friedberg, SL Schwartz, RS Chapkin
Advances in Nutrition 3 (3), 450S-455S, 2012
Connecting the protein structure universe by using sparse recurring fragments
I Friedberg, A Godzik
Structure 13 (8), 1213-1224, 2005
Protist diversity in a permanently ice-covered Antarctic lake during the polar night transition
S Bielewicz, E Bell, W Kong, I Friedberg, JC Priscu, RM Morgan-Kiss
The ISME journal 5 (9), 1559-1564, 2011
Computational protein function prediction: are we making progress?
A Godzik, M Jambon, I Friedberg
Cellular and molecular life sciences 64 (19-20), 2505, 2007
Persistently conserved positions in structurally similar, sequence dissimilar proteins: roles in preserving protein fold and function
I Friedberg, H Margalit
Protein Science 11 (2), 350-360, 2002
The COMBREX project: design, methodology, and initial results
BP Anton, YC Chang, P Brown, HP Choi, LL Faller, J Guleria, Z Hu, ...
PLoS biology 11 (8), 2013
Using an alignment of fragment strings for comparing protein structures
I Friedberg, T Harder, R Kolodny, E Sitbon, Z Li, A Godzik
Bioinformatics 23 (2), e219-e224, 2007
JAFA: a protein function annotation meta-server
I Friedberg, T Harder, A Godzik
Nucleic acids research 34 (suppl 2), W379-W381, 2006
Evaluation of PSI-BLAST alignment accuracy in comparison to structural alignments
I Friedberg, T Kaplan, H Margalit
Protein Science 9 (11), 2278-2284, 2000
New avenues in protein function prediction
I Friedberg, M Jambon, A Godzik
Protein science: a publication of the Protein Society 15 (6), 1527, 2006
Il sistema al momento non può eseguire l'operazione. Riprova più tardi.
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