| Virus genomes reveal factors that spread and sustained the Ebola epidemic G Dudas, LM Carvalho, T Bedford, AJ Tatem, G Baele, NR Faria, DJ Park, ... Nature 544 (7650), 309-315, 2017 | 437 | 2017 |
| A year of genomic surveillance reveals how the SARS-CoV-2 pandemic unfolded in Africa E Wilkinson, M Giovanetti, H Tegally, JE San, R Lessells, D Cuadros, ... Science 374 (6566), 423-431, 2021 | 188 | 2021 |
| Tracking the establishment of local endemic populations of an emergent enteric pathogen KE Holt, TV Thieu Nga, DP Thanh, H Vinh, DW Kim, MP Vu Tra, ... Proceedings of the National Academy of Sciences 110 (43), 17522-17527, 2013 | 145 | 2013 |
| A changing picture of shigellosis in southern Vietnam: shifting species dominance, antimicrobial susceptibility and clinical presentation H Vinh, NTK Nhu, TVT Nga, PT Duy, JI Campbell, NVM Hoang, MF Boni, ... BMC infectious diseases 9 (1), 204, 2009 | 141 | 2009 |
| Rapid outbreak sequencing of Ebola virus in Sierra Leone identifies transmission chains linked to sporadic cases A Arias, SJ Watson, D Asogun, EA Tobin, J Lu, MVT Phan, U Jah, ... Virus Evolution 2 (1), vew016, 2016 | 131 | 2016 |
| The burden and characteristics of enteric fever at a healthcare facility in a densely populated area of Kathmandu A Karkey, A Arjyal, KL Anders, MF Boni, S Dongol, S Koirala, MVT Phan, ... PloS one 5 (11), e13988, 2010 | 104 | 2010 |
| Deep sequencing of norovirus genomes defines evolutionary patterns in an urban tropical setting M Cotten, V Petrova, MVT Phan, MA Rabaa, SJ Watson, SH Ong, ... Journal of virology 88 (19), 11056-11069, 2014 | 97 | 2014 |
| The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance. H Tegally, JE San, M Cotten, B Tegomoh, G Mboowa, DP Martin, C Baxter, ... medRxiv, 2022 | 91 | 2022 |
| Identification and characterization of Coronaviridae genomes from Vietnamese bats and rats based on conserved protein domains MVT Phan, T Ngo Tri, P Hong Anh, S Baker, P Kellam, M Cotten Virus Evolution 4 (2), vey035, 2018 | 83 | 2018 |
| Virus Metagenomics in Farm Animals: A Systematic Review KTT Kwok, DF Nieuwenhuijse, MVT Phan, MPG Koopmans Viruses 12 (1), 107, 2020 | 73 | 2020 |
| A Prospective Multi-Center Observational Study of Children Hospitalized with Diarrhea in Ho Chi Minh City, Vietnam CN Thompson, MVT Phan, NVM Hoang, P Van Minh, NT Vinh, CT Thuy, ... The American journal of tropical medicine and hygiene 92 (5), 1045-1052, 2015 | 73 | 2015 |
| Unbiased whole-genome deep sequencing of human and porcine stool samples reveals circulation of multiple groups of rotaviruses and a putative zoonotic infection MVT Phan, PH Anh, NV Cuong, BBO Munnink, L van der Hoek, PT My, ... Virus Evolution 2 (2), vew027, 2016 | 72 | 2016 |
| The Vietnam Initiative on Zoonotic Infections (VIZIONS): A Strategic Approach to Studying Emerging Zoonotic Infectious Diseases MA Rabaa, NT Tue, TM Phuc, J Carrique-Mas, K Saylors, M Cotten, ... Ecohealth 12 (4), 726-735, 2015 | 67 | 2015 |
| Emergence and spread of a SARS-CoV-2 lineage A variant (A. 23.1) with altered spike protein in Uganda DL Bugembe, MVT Phan, I Ssewanyana, P Semanda, H Nansumba, ... Nature microbiology 6 (8), 1094-1101, 2021 | 66 | 2021 |
| The validation and utility of a quantitative one-step multiplex RT real-time PCR targeting rotavirus A and norovirus TTN Dung, VV Phat, TVT Nga, MVT Phan, PT Duy, JI Campbell, CT Thuy, ... Journal of virological methods 187 (1), 138-143, 2013 | 61 | 2013 |
| Identification of Possible Virulence Marker from Campylobacter jejuni Isolates JW Harrison, TTN Dung, F Siddiqui, S Korbrisate, H Bukhari, MPV Tra, ... Emerging infectious diseases 20 (6), 1026, 2014 | 55 | 2014 |
| Spike protein cleavage-activation mediated by the SARS-CoV-2 P681R mutation: a case-study from its first appearance in variant of interest (VOI) A. 23.1 identified in Uganda B Lubinski, LE Frazier, MVT Phan, DL Bugembe, T Tang, S Daniel, ... bioRxiv, 2021.06. 30.450632, 2021 | 50 | 2021 |
| A SARS-CoV-2 lineage A variant (A. 23.1) with altered spike has emerged and is dominating the current Uganda epidemic DL Bugembe, M VT Phan, I Ssewanyana, P Semanda, H Nansumba, ... MedRxiv, 2021.02. 08.21251393, 2021 | 46 | 2021 |
| The impact of environmental and climatic variation on the spatiotemporal trends of hospitalized pediatric diarrhea in Ho Chi Minh City, Vietnam CN Thompson, JL Zelner, TDH Nhu, MVT Phan, PH Le, HN Thanh, ... Health & Place 35, 147-154, 2015 | 44 | 2015 |
| Setting a baseline for global urban virome surveillance in sewage DF Nieuwenhuijse, BB Oude Munnink, MVT Phan, P Munk, ... Scientific Reports 10 (1), 13748, 2020 | 43 | 2020 |
Matthew CottenResearch Professor, Complex Adaptive Systems Initiative, Arizona State UniversityEmail verificata su asu.edu
