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Bin Li
Bin Li
Ludwig Institute for Cancer Research
Verified email at ucsd.edu
Title
Cited by
Cited by
Year
Broad histone H3K4me3 domains in mouse oocytes modulate maternal-to-zygotic transition
JA Dahl, I Jung, H Aanes, GD Greggains, A Manaf, M Lerdrup, G Li, ...
Nature 537 (7621), 548-552, 2016
3652016
Extrachromosomal oncogene amplification drives tumour evolution and genetic heterogeneity
KM Turner, V Deshpande, D Beyter, T Koga, J Rusert, C Lee, B Li, ...
Nature 543 (7643), 122-125, 2017
3502017
Limitations and potentials of current motif discovery algorithms
J Hu, B Li, D Kihara
Nucleic acids research 33 (15), 4899-4913, 2005
2962005
A tiling-deletion-based genetic screen for cis-regulatory element identification in mammalian cells
Y Diao, R Fang, B Li, Z Meng, J Yu, Y Qiu, KC Lin, H Huang, T Liu, ...
Nature methods 14 (6), 629-635, 2017
1902017
A compendium of promoter-centered long-range chromatin interactions in the human genome
I Jung, A Schmitt, Y Diao, AJ Lee, T Liu, D Yang, C Tan, J Eom, M Chan, ...
Nature genetics 51 (10), 1442-1449, 2019
1752019
Circular ecDNA promotes accessible chromatin and high oncogene expression
S Wu, KM Turner, N Nguyen, R Raviram, M Erb, J Santini, J Luebeck, ...
Nature 575 (7784), 699-703, 2019
1692019
EGFR mutation promotes glioblastoma through epigenome and transcription factor network remodeling
F Liu, GC Hon, GR Villa, KM Turner, S Ikegami, H Yang, Z Ye, B Li, ...
Molecular cell 60 (2), 307-318, 2015
1482015
Fast protein tertiary structure retrieval based on global surface shape similarity
L Sael, B Li, D La, Y Fang, K Ramani, R Rustamov, D Kihara
Proteins: Structure, Function, and Bioinformatics 72 (4), 1259-1273, 2008
1332008
A new class of temporarily phenotypic enhancers identified by CRISPR/Cas9-mediated genetic screening
Y Diao, B Li, Z Meng, I Jung, AY Lee, J Dixon, L Maliskova, K Guan, ...
Genome research 26 (3), 397-405, 2016
1252016
Co-evolution of hormone metabolism and signaling networks expands plant adaptive plasticity
JK Weng, M Ye, B Li, JP Noel
Cell 166 (4), 881-893, 2016
1162016
An atlas of dynamic chromatin landscapes in mouse fetal development
DU Gorkin, I Barozzi, Y Zhao, Y Zhang, H Huang, AY Lee, B Li, J Chiou, ...
Nature 583 (7818), 744-751, 2020
1142020
Characterization of local geometry of protein surfaces with the visibility criterion
B Li, S Turuvekere, M Agrawal, D La, K Ramani, D Kihara
Proteins: Structure, Function, and Bioinformatics 71 (2), 670-683, 2008
972008
Rapid comparison of properties on protein surface
L Sael, D La, B Li, R Rustamov, D Kihara
Proteins: Structure, function, and bioinformatics 73 (1), 1-10, 2008
952008
In vivo RNA interference screens identify regulators of antiviral CD4+ and CD8+ T cell differentiation
R Chen, S Bélanger, MA Frederick, B Li, RJ Johnston, N Xiao, YC Liu, ...
Immunity 41 (2), 325-338, 2014
862014
Genetic modulation of RNA splicing with a CRISPR-guided cytidine deaminase
J Yuan, Y Ma, T Huang, Y Chen, Y Peng, B Li, J Li, Y Zhang, B Song, ...
Molecular cell 72 (2), 380-394. e7, 2018
812018
3D-SURFER: software for high-throughput protein surface comparison and analysis
D La, J Esquivel-Rodríguez, V Venkatraman, B Li, L Sael, S Ueng, ...
Bioinformatics 25 (21), 2843-2844, 2009
752009
Protein docking prediction using predicted protein-protein interface
B Li, D Kihara
BMC bioinformatics 13 (1), 1-17, 2012
692012
Promoter-proximal CTCF binding promotes distal enhancer-dependent gene activation
N Kubo, H Ishii, X Xiong, S Bianco, F Meitinger, R Hu, JD Hocker, ...
Nature structural & molecular biology 28 (2), 152-161, 2021
572021
Spatiotemporal DNA methylome dynamics of the developing mouse fetus
Y He, M Hariharan, DU Gorkin, DE Dickel, C Luo, RG Castanon, JR Nery, ...
Nature 583 (7818), 752-759, 2020
452020
RNA-binding protein hnRNPLL regulates mRNA splicing and stability during B-cell to plasma-cell differentiation
X Chang, B Li, A Rao
Proceedings of the National Academy of Sciences 112 (15), E1888-E1897, 2015
442015
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Articles 1–20