Colin Dewey
Colin Dewey
Professor of Biostatistics and Medical Informatics, University of Wisconsin-Madison
Verified email at biostat.wisc.edu - Homepage
TitleCited byYear
Initial sequencing and comparative analysis of the mouse genome
RH Waterston, K Lindblad-Toh, E Birney, J Rogers, JF Abril, P Agarwal, ...
Nature 420 (6915), 520-562, 2002
69042002
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
B Li, CN Dewey
BMC bioinformatics 12 (1), 323, 2011
68372011
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
ENCODE Project Consortium
nature 447 (7146), 799, 2007
49502007
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
BJ Haas, A Papanicolaou, M Yassour, M Grabherr, PD Blood, J Bowden, ...
Nature protocols 8 (8), 1494, 2013
36532013
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
LDW Hillier, W Miller, E Birney, W Warren, RC Hardison, CP Ponting, ...
Nature 423 (10), 695-777, 2014
22502014
Genome sequence of the Brown Norway rat yields insights into mammalian evolution
RA Gibbs, GM Weinstock, ML Metzker, DM Muzny, EJ Sodergren, ...
Nature 428 (6982), 493-520, 2004
20962004
RNA-Seq gene expression estimation with read mapping uncertainty
B Li, V Ruotti, RM Stewart, JA Thomson, CN Dewey
Bioinformatics 26 (4), 493-500, 2010
7822010
Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures
A Stark, MF Lin, P Kheradpour, JS Pedersen, L Parts, JW Carlson, ...
Nature 450 (7167), 219-232, 2007
6372007
Population genomics: whole-genome analysis of polymorphism and divergence in Drosophila simulans
DJ Begun, AK Holloway, K Stevens, LDW Hillier, YP Poh, MW Hahn, ...
PLoS biology 5 (11), 2007
6082007
A genome-wide map of conserved microRNA targets in C. elegans
S Lall, D Grün, A Krek, K Chen, YL Wang, CN Dewey, P Sood, T Colombo, ...
Current biology 16 (5), 460-471, 2006
4902006
BUCKy: gene tree/species tree reconciliation with Bayesian concordance analysis
BR Larget, SK Kotha, CN Dewey, C Ané
Bioinformatics 26 (22), 2910-2911, 2010
3432010
Fast statistical alignment
RK Bradley, A Roberts, M Smoot, S Juvekar, J Do, C Dewey, I Holmes, ...
PLoS computational biology 5 (5), e1000392, 2009
3362009
Genomic variation in natural populations of Drosophila melanogaster
CH Langley, K Stevens, C Cardeno, YCG Lee, DR Schrider, JE Pool, ...
Genetics 192 (2), 533-598, 2012
2662012
Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome
EH Margulies, GM Cooper, G Asimenos, DJ Thomas, CN Dewey, A Siepel, ...
Genome research 17 (6), 760-774, 2007
2312007
Evaluation of de novo transcriptome assemblies from RNA-Seq data
B Li, N Fillmore, Y Bai, M Collins, JA Thomson, R Stewart, CN Dewey
Genome biology 15 (12), 553, 2014
1762014
Aligning multiple whole genomes with Mercator and MAVID
CN Dewey
Comparative genomics, 221-235, 2007
1062007
Gata2 cis-element is required for hematopoietic stem cell generation in the mammalian embryo
X Gao, KD Johnson, YI Chang, ME Boyer, CN Dewey, J Zhang, ...
Journal of Experimental Medicine 210 (13), 2833-2842, 2013
982013
Rbm20 regulates titin alternative splicing as a splicing repressor
S Li, W Guo, CN Dewey, ML Greaser
Nucleic acids research 41 (4), 2659-2672, 2013
902013
Comparative RNA-seq analysis in the unsequenced axolotl: the oncogene burst highlights early gene expression in the blastema
R Stewart, CA Rascon, S Tian, J Nie, C Barry, LF Chu, H Ardalani, ...
PLoS computational biology 9 (3), 2013
862013
Fine-scale phylogenetic discordance across the house mouse genome
MA White, C Ané, CN Dewey, BR Larget, BA Payseur
PLoS Genetics 5 (11), 2009
822009
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