Loyal A. Goff
Loyal A. Goff
Johns Hopkins Institute of Genetic Medicine
Verified email at jhmi.edu - Homepage
Title
Cited by
Cited by
Year
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
C Trapnell, A Roberts, L Goff, G Pertea, D Kim, DR Kelley, H Pimentel, ...
Nature protocols 7 (3), 562-578, 2012
93992012
Differential analysis of gene regulation at transcript resolution with RNA-seq
C Trapnell, DG Hendrickson, M Sauvageau, L Goff, JL Rinn, L Pachter
Nature biotechnology 31 (1), 46-53, 2013
28872013
Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
MN Cabili, C Trapnell, L Goff, M Koziol, B Tazon-Vega, A Regev, JL Rinn
Genes & development 25 (18), 1915-1927, 2011
27672011
Multiple knockout mouse models reveal lincRNAs are required for life and brain development
M Sauvageau, LA Goff, S Lodato, B Bonev, AF Groff, C Gerhardinger, ...
elife 2, e01749, 2013
5582013
Topological organization of multichromosomal regions by the long intergenic noncoding RNA Firre
E Hacisuleyman, LA Goff, C Trapnell, A Williams, J Henao-Mejia, L Sun, ...
Nature structural & molecular biology 21 (2), 198, 2014
4792014
DNMT1-interacting RNAs block gene-specific DNA methylation
A Di Ruscio, AK Ebralidze, T Benoukraf, G Amabile, LA Goff, J Terragni, ...
Nature 503 (7476), 371-376, 2013
4382013
Long noncoding RNAs regulate adipogenesis
L Sun, LA Goff, C Trapnell, R Alexander, KA Lo, E Hacisuleyman, ...
Proceedings of the National Academy of Sciences 110 (9), 3387-3392, 2013
3732013
Differential regulation of microRNA stability
S Bail, M Swerdel, H Liu, X Jiao, LA Goff, RP Hart, M Kiledjian
Rna 16 (5), 1032-1039, 2010
3012010
The microRNA miR-181 is a critical cellular metabolic rheostat essential for NKT cell ontogenesis and lymphocyte development and homeostasis
J Henao-Mejia, A Williams, LA Goff, M Staron, P Licona-Limón, SM Kaech, ...
Immunity 38 (5), 984-997, 2013
2242013
MicroRNA expression pattern of undifferentiated and differentiated human embryonic stem cells
U Lakshmipathy, B Love, LA Goff, R Jörnsten, R Graichen, RP Hart, ...
Stem cells and development 16 (6), 1003-1016, 2007
2082007
cummeRbund: Analysis, exploration, manipulation, and visualization of Cufflinks high-throughput sequencing data
L Goff, C Trapnell, D Kelley
R package version 2 (0), 2013
1862013
DeCoN: genome-wide analysis of in vivo transcriptional dynamics during pyramidal neuron fate selection in neocortex
BJ Molyneaux, LA Goff, AC Brettler, HH Chen, JR Brown, S Hrvatin, ...
Neuron 85 (2), 275-288, 2015
1632015
The long non-coding RNA Morrbid regulates Bim and short-lived myeloid cell lifespan
JJ Kotzin, SP Spencer, SJ McCright, DBU Kumar, MA Collet, WK Mowel, ...
Nature 537 (7619), 239-243, 2016
1522016
Linking RNA biology to lncRNAs
LA Goff, JL Rinn
Genome research 25 (10), 1456-1465, 2015
1362015
Ago2 immunoprecipitation identifies predicted microRNAs in human embryonic stem cells and neural precursors
LA Goff, J Davila, MR Swerdel, JC Moore, RI Cohen, H Wu, YE Sun, ...
PloS one 4 (9), e7192, 2009
1312009
Differentiating human multipotent mesenchymal stromal cells regulate microRNAs: prediction of microRNA regulation by PDGF during osteogenesis
LA Goff, S Boucher, CL Ricupero, S Fenstermacher, M Swerdel, ...
Experimental hematology 36 (10), 1354-1369. e2, 2008
1062008
Spatiotemporal expression and transcriptional perturbations by long noncoding RNAs in the mouse brain
LA Goff, AF Groff, M Sauvageau, Z Trayes-Gibson, DB Sanchez-Gomez, ...
Proceedings of the National Academy of Sciences 112 (22), 6855-6862, 2015
992015
Single-cell RNA-seq analysis of retinal development identifies NFI factors as regulating mitotic exit and late-born cell specification
BS Clark, GL Stein-O’Brien, F Shiau, GH Cannon, E Davis-Marcisak, ...
Neuron 102 (6), 1111-1126. e5, 2019
982019
Expression profiling of synaptic microRNAs from the adult rat brain identifies regional differences and seizure-induced dynamic modulation
I Pichardo-Casas, LA Goff, MR Swerdel, A Athie, J Davila, ...
Brain research 1436, 20-33, 2012
882012
Gene co-regulation by Fezf2 selects neurotransmitter identity and connectivity of corticospinal neurons
S Lodato, BJ Molyneaux, E Zuccaro, LA Goff, HH Chen, W Yuan, ...
Nature neuroscience 17 (8), 1046-1054, 2014
772014
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Articles 1–20