Helen Cook
Helen Cook
Novo Nordisk Foundation Center for Protein Research University of Copenhagen
Verified email at cruk.cam.ac.uk
TitleCited byYear
The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible
D Szklarczyk, JH Morris, H Cook, M Kuhn, S Wyder, M Simonovic, ...
Nucleic acids research 45 (D1), D362-D368, 2017
23192017
eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences
J Huerta-Cepas, D Szklarczyk, K Forslund, H Cook, D Heller, MC Walter, ...
Nucleic Acids Research 44 (November 2015), 286-293, 2015
7872015
eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses
J Huerta-Cepas, D Szklarczyk, D Heller, A Hernández-Plaza, SK Forslund, ...
Nucleic acids research 47 (D1), D309-D314, 2018
352018
Sigma factors in a thousand E. coli genomes
H Cook, DW Ussery
Environmental microbiology 15 (12), 3121-3129, 2013
262013
miRandola 2017: a curated knowledge base of non-invasive biomarkers
F Russo, S Di Bella, F Vannini, G Berti, F Scoyni, HV Cook, A Santos, ...
Nucleic Acids Research 46 (D1), D354-D359, 2017
212017
Virulence genes in a probiotic E. oli product with a recorded long history of safe use
T Wassenaar, A Zschüttig, C Beimfohr, T Geske, C Auerbach, H Cook, ...
European Journal of Microbiology and Immunology 5 (1), 81-93, 2015
202015
A dictionary-and rule-based system for identification of bacteria and habitats in text
HV Cook, E Pafilis, LJ Jensen
Proceedings of the 4th BioNLP Shared Task Workshop, 50-55, 2016
132016
Viruses. STRING: A virus-host protein-protein interaction database
H Cook, N Doncheva, D Szklarczyk, C von Mering, L Jensen
Viruses 10 (10), 519, 2018
82018
A Guide to Dictionary-Based Text Mining
HV Cook, LJ Jensen
Bioinformatics and Drug Discovery, 73-89, 2019
22019
An Integrative Approach to Virus–Host Protein–Protein Interactions
HV Cook, LJ Jensen
Computational Cell Biology, 175-196, 2018
12018
Creation and evaluation of a dictionary-based tagger for virus species and proteins
H Cook, R Berzins, CL Rodrıguez, JM Cejuela, LJ Jensen
BioNLP 2017, 91-98, 2017
12017
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Articles 1–11