Bogdan Barz

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Ioan KosztinProfessor of Physics, University of MissouriVerified email at missouri.edu
Birgit StrodelProfessor, Computational Biochemistry, Research Centre Jülich & University Düsseldorf, GermanyVerified email at strodel.info
Brigita UrbancProfessor of Physics & Associate Head for Graduate Studies, Drexel UniversityVerified email at drexel.edu
Adrian NeaguProfessor of Biophysics, Victor Babes University of Medicine and Pharmacy Timisoara, RomaniaVerified email at umft.ro
Lorant JanosiSenior Researcher I, National Institute for Research and Development of Isotopic and Molecular TechnologiesVerified email at itim-cj.ro
Qinghua LiaoUniversity of BarcelonaVerified email at ub.edu
Dong XuCurators’ Distinguished Professor, University of MissouriVerified email at missouri.edu
Dieter WillboldProfessor of Physical Biology, Heinrich-Heine-UniversityVerified email at fz-juelich.de
Yi ShangProfessor, EECS Dept, University of MissouriVerified email at missouri.edu
Qingguo WangMeharry Medical CollegeVerified email at mmc.edu
Florica Aldea MateiProfessor of Mathematics, University of Agricultural Sciences and Veterinary Medicine Cluj-NapocaVerified email at usamvcluj.ro
Prof Olubiyi Olujide O.Department of Pharmaceutical and Medicinal Chemistry, College of Pharmacy, Afe Babalola UniversityVerified email at abuad.edu.ng
Stelian PinteaNational Institute for R&D of Isotopic and Molecular TechnologiesVerified email at itim-cj.ro
Karoly JakabFork&Good, Inc., Modern Meadow, Inc.Verified email at missouri.edu
Rama BansilBoston UniversityVerified email at bu.edu
Catalin DUCUUniversity of PitestiVerified email at upit.ro
Suman SamantrayResearch Associate, Pacific Northwest National LaboratoryVerified email at pnnl.gov
Rodica TurcuSenior researcher, National Institute R&D for Isotopic and Molecular Technologies Cluj-Napoca, RomaniaVerified email at itim-cj.ro
ovidiu panaDr. fizician , INCDTIM, ClujVerified email at itim-cj.ro
Jiong ZhangDepartment of Physics and Astronomy, University of Missouri-Columbia.Verified email at missouri.edu

Bogdan Barz

Computational biophysicist

Verified email at fz-juelich.de

Protein structure and self assembly Molecular dynamics


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Pathways of amyloid-β aggregation depend on oligomer shape B Barz, Q Liao, B Strodel Journal of the American Chemical Society 140 (1), 319-327, 2018	144	2018
Dimer formation enhances structural differences between amyloid β-protein (1–40) and (1–42): an explicit-solvent molecular dynamics study B Barz, B Urbanc PloS one 7 (4), e34345, 2012	143	2012
Calculating potentials of mean force and diffusion coefficients from nonequilibrium processes without Jarzynski’s equality I Kosztin, B Barz, L Janosi The Journal of chemical physics 124 (6), 2006	135	2006
MUFOLD: A new solution for protein 3D structure prediction J Zhang, Q Wang, B Barz, Z He, I Kosztin, Y Shang, D Xu Proteins: Structure, Function, and Bioinformatics 78 (5), 1137-1152, 2010	91	2010
A kinetic approach to the sequence–aggregation relationship in disease-related protein assembly B Barz, DJ Wales, B Strodel The Journal of Physical Chemistry B 118 (4), 1003-1011, 2014	73	2014
Early amyloid β-protein aggregation precedes conformational change B Barz, OO Olubiyi, B Strodel Chemical communications 50 (40), 5373-5375, 2014	68	2014
Kinetic Monte Carlo and cellular particle dynamics simulations of multicellular systems E Flenner, L Janosi, B Barz, A Neagu, G Forgacs, I Kosztin Physical Review E—Statistical, Nonlinear, and Soft Matter Physics 85 (3 …, 2012	64	2012
Aβ42 pentamers/hexamers are the smallest detectable oligomers in solution M Wolff, B Zhang-Haagen, C Decker, B Barz, M Schneider, R Biehl, ... Scientific reports 7 (1), 2493, 2017	60	2017
Computational modeling of tissue self-assembly A Neagu, I Kosztin, K Jakab, B Barz, M Neagu, R Jamison, G Forgacs Modern Physics Letters B 20 (20), 1217-1231, 2006	50	2006
Understanding amyloid‐β oligomerization at the molecular level: the role of the fibril surface B Barz, B Strodel Chemistry–A European Journal 22 (26), 8768-8772, 2016	45	2016
Aβ under stress: the effects of acidosis, Cu 2+-binding, and oxidation on amyloid β-peptide dimers Q Liao, MC Owen, S Bali, B Barz, B Strodel Chemical communications 54 (56), 7766-7769, 2018	42	2018
Minimal model of self-assembly: Emergence of diversity and complexity B Barz, B Urbanc The Journal of Physical Chemistry B 118 (14), 3761-3770, 2014	39	2014
Fully atomistic Aβ40 and Aβ42 oligomers in water: Observation of porelike conformations MJ Voelker, B Barz, B Urbanc Journal of chemical theory and computation 13 (9), 4567-4583, 2017	32	2017
Computational modeling of epithelial–mesenchymal transformations A Neagu, V Mironov, I Kosztin, B Barz, M Neagu, RA Moreno-Rodriguez, ... Biosystems 100 (1), 23-30, 2010	30	2010
Folding of pig gastric mucin non-glycosylated domains: a discrete molecular dynamics study B Barz, BS Turner, R Bansil, B Urbanc Journal of biological physics 38, 681-703, 2012	24	2012
Conformational transitions of the Amyloid‐β peptide upon copper (II) binding and pH changes Q Liao, MC Owen, OO Olubiyi, B Barz, B Strodel Israel Journal of Chemistry 57 (7-8), 771-784, 2017	23	2017
Membrane curvature and surface area per lipid affect the conformation and oligomeric state of HIV-1 fusion peptide: a combined FTIR and MD simulation study B Barz, TC Wong, I Kosztin Biochimica et Biophysica Acta (BBA)-Biomembranes 1778 (4), 945-953, 2008	21	2008
Molecular dynamics simulations of protein aggregation: protocols for simulation setup and analysis with Markov state models and transition networks S Samantray, W Schumann, AM Illig, M Carballo-Pacheco, A Paul, B Barz, ... Computer simulations of aggregation of proteins and peptides, 235-279, 2022	19	2022
Compact fibril-like structure of amyloid β-peptide (1–42) monomers B Barz, AK Buell, S Nath Chemical communications 57 (7), 947-950, 2021	17	2021
Large-scale, dynamin-like motions of the human guanylate binding protein 1 revealed by multi-resolution simulations B Barz, J Loschwitz, B Strodel PLOS Computational Biology 15 (10), e1007193, 2019	17	2019

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