| SNP calling from RNA-seq data without a reference genome: identification, quantification, differential analysis and impact on the protein sequence H Lopez-Maestre, L Brinza, C Marchet, J Kielbassa, S Bastien, ... Nucleic Acids Research 44 (19), e148-e148, 2016 | 43 | 2016 |
| TEtools facilitates big data expression analysis of transposable elements and reveals an antagonism between their activity and that of piRNA genes E Lerat, M Fablet, L Modolo, H Lopez-Maestre, C Vieira Nucleic acids research 45 (4), e17-e17, 2016 | 23 | 2016 |
| Identification of misexpressed genetic elements in hybrids between Drosophila-related species H Lopez-Maestre, EAG Carnelossi, V Lacroix, N Burlet, B Mugat, ... Scientific Reports 7, 2017 | 9 | 2017 |
| Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads L Lima, B Sinaimeri, G Sacomoto, H Lopez-Maestre, C Marchet, V Miele, ... Algorithms for Molecular Biology 12 (1), 2, 2017 | 7 | 2017 |
| Transposable Element Misregulation Is Linked to the Divergence between Parental piRNA Pathways in Drosophila Hybrids V Romero-Soriano, L Modolo, H Lopez-Maestre, B Mugat, E Pessia, ... Genome biology and evolution 9 (6), 1450-1470, 2017 | 6 | 2017 |
| Analyses et méthodes pour les données transcriptomiques issues d’espèces non modèles: Variation de l’expression des éléments transposables (et des gènes) et variants nucléotidiques H Lopez-Maestre Université Claude Bernard Lyon 1, 2017 | | 2017 |
