Stephanie C. Hicks

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Leonardo Collado-TorresInvestigator at LIBD + Asst. Prof., Department of Biostatistics, JHBSPHVerified email at libd.org
Kristen MaynardInvestigator, Lieber Institute for Brain DevelopmentVerified email at libd.org
Rafael A IrizarryProfessor, Biostatistics and Computational Biology, Dana-Farber and HarvardVerified email at ds.dfci.harvard.edu
Thomas M. HydeChief Operating Officer, Lieber Institute for Brain DevelopmentVerified email at libd.org
Madhavi TippaniLieber Institute for Brain DevelopmentVerified email at libd.org
Keri MartinowichSenior Investigator, Lieber Institute & Professor, Johns Hopkins School of MedicineVerified email at libd.org
Davide RissoDepartment of Statistical Sciences, University of Padova, ItalyVerified email at unipd.it
Andrew E. JaffeVP, Head of Data Sciences, Neumora TherapeuticsVerified email at neumoratx.com
Marek KimmelProfessor of Statistics and Bioengineering, Rice UniversityVerified email at rice.edu
F. William TownesAssistant Professor of Statistics and Data Science, Carnegie Mellon UniversityVerified email at andrew.cmu.edu
Charlotte SonesonResearch Associate, FMI, BaselVerified email at fmi.ch
Brianna K. BarryNeuroscientistVerified email at jhmi.edu
Mingxiang TengBiostatistics & Bioinformatics, Moffitt Cancer CenterVerified email at moffitt.org
Stephanie Cerceo PageResearch Scientist, LIBDVerified email at libd.org
Casey S. GreeneBiomedical Informatics; Center for Health AI; University of Colorado Anschutz MedicalVerified email at cuanschutz.edu
Martin J. AryeeAssociate Professor, Dept of Data Science, Dana Farber Cancer Institute & Dept of Pathology, HarvardVerified email at ds.dfci.harvard.edu
Aaron LunGenentech, Inc.Verified email at gene.com
David A. WheelerBaylor College of MedicineVerified email at bcm.edu
Raphael GottardoLausanne University Hospital and University of LausanneVerified email at chuv.ch
Kevin RUE-ALBRECHTOxford UniversityVerified email at imm.ox.ac.uk

Stephanie C. Hicks

Associate Professor, Johns Hopkins Bloomberg School of Public Health

Verified email at jhu.edu - Homepage

computational genomics biostatistics data science machine learning analytic design theory


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Eleven grand challenges in single-cell data science D Lähnemann, J Köster, E Szczurek, DJ McCarthy, SC Hicks, ... Genome biology 21, 1-35, 2020	950	2020
50 years of data science D Donoho Journal of Computational and Graphical Statistics 26 (4), 745-766, 2017	709	2017
Orchestrating single-cell analysis with Bioconductor RA Amezquita, ATL Lun, E Becht, VJ Carey, LN Carpp, L Geistlinger, ... Nature methods 17 (2), 137-145, 2020	599	2020
Missing data and technical variability in single-cell RNA-sequencing experiments SC Hicks, FW Townes, M Teng, RA Irizarry Biostatistics 19 (4), 562-578, 2018	564*	2018
Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex KR Maynard, L Collado-Torres, LM Weber, C Uytingco, BK Barry, ... Nature neuroscience 24 (3), 425-436, 2021	468	2021
Feature selection and dimension reduction for single-cell RNA-Seq based on a multinomial model FW Townes, SC Hicks, MJ Aryee, RA Irizarry Genome biology 20, 1-16, 2019	424	2019
Comparison of outcomes of synthetic mesh vs suture repair of elective primary ventral herniorrhaphy: a systematic review and meta-analysis MT Nguyen, RL Berger, SC Hicks, JA Davila, LT Li, LS Kao, MK Liang JAMA surgery 149 (5), 415-421, 2014	278	2014
Prediction of missense mutation functionality depends on both the algorithm and sequence alignment employed S Hicks, DA Wheeler, SE Plon, M Kimmel Human mutation 32 (6), 661-668, 2011	271	2011
A practical guide to methods controlling false discoveries in computational biology K Korthauer, PK Kimes, C Duvallet, A Reyes, A Subramanian, M Teng, ... Genome biology 20, 1-21, 2019	267	2019
A systematic evaluation of single-cell RNA-sequencing imputation methods W Hou, Z Ji, H Ji, SC Hicks Genome biology 21, 1-30, 2020	249	2020
Development and validation of a risk-stratification score for surgical site occurrence and surgical site infection after open ventral hernia repair RL Berger, LT Li, SC Hicks, JA Davila, LS Kao, MK Liang Journal of the American College of Surgeons 217 (6), 974-982, 2013	219	2013
Evolutionary action score of TP53 identifies high-risk mutations associated with decreased survival and increased distant metastases in head and neck cancer DM Neskey, AA Osman, TJ Ow, P Katsonis, T McDonald, SC Hicks, ... Cancer research 75 (7), 1527-1536, 2015	168	2015
Reproducibility standards for machine learning in the life sciences BJ Heil, MM Hoffman, F Markowetz, SI Lee, CS Greene, SC Hicks Nature Methods 18 (10), 1132-1135, 2021	146	2021
Trans-cutaneous closure of central defects (TCCD) in laparoscopic ventral hernia repairs (LVHR) ML Clapp, SC Hicks, SS Awad, MK Liang World journal of surgery 37, 42-51, 2013	125	2013
A guide to teaching data science SC Hicks, RA Irizarry The American Statistician 72 (4), 382-391, 2018	119	2018
Single-nucleus transcriptome analysis reveals cell-type-specific molecular signatures across reward circuitry in the human brain MN Tran, KR Maynard, A Spangler, LA Huuki, KD Montgomery, ... Neuron 109 (19), 3088-3103. e5, 2021	113	2021
quantro: a data-driven approach to guide the choice of an appropriate normalization method SC Hicks, RA Irizarry Genome biology 16, 1-8, 2015	113*	2015
Smooth quantile normalization SC Hicks, K Okrah, JN Paulson, J Quackenbush, RA Irizarry, HC Bravo Biostatistics 19 (2), 185-198, 2018	97	2018
Evolutionary action score of TP53 coding variants is predictive of platinum response in head and neck cancer patients AA Osman, DM Neskey, P Katsonis, AA Patel, AM Ward, TK Hsu, ... Cancer research 75 (7), 1205-1215, 2015	96	2015
Patient satisfaction, chronic pain, and functional status following laparoscopic ventral hernia repair MK Liang, M Clapp, LT Li, RL Berger, SC Hicks, S Awad World journal of surgery 37 (3), 530-537, 2013	92	2013

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