John Deck
John Deck
University of California at Berkeley, Berkeley Natural History Museums
Verified email at
Cited by
Cited by
Semantics in support of biodiversity knowledge discovery: an introduction to the biological collections ontology and related ontologies
RL Walls, J Deck, R Guralnick, S Baskauf, R Beaman, S Blum, S Bowers, ...
PloS one 9 (3), e89606, 2014
Identifiers for the 21st century: How to design, provision, and reuse persistent identifiers to maximize utility and impact of life science data
JA McMurry, N Juty, N Blomberg, T Burdett, T Conlin, N Conte, M Courtot, ...
PLoS biology 15 (6), e2001414, 2017
The Genomic Observatories Metadatabase (GeOMe): A new repository for field and sampling event metadata associated with genetic samples
J Deck, MR Gaither, R Ewing, CE Bird, N Davies, C Meyer, C Riginos, ...
PLoS biology 15 (8), e2002925, 2017
Community next steps for making globally unique identifiers work for biocollections data
RP Guralnick, N Cellinese, J Deck, RL Pyle, J Kunze, L Penev, R Walls, ...
ZooKeys, 133, 2015
The founding charter of the Genomic Observatories Network
N Davies, D Field, L Amaral-Zettler, MS Clark, J Deck, A Drummond, ...
GigaScience 3 (1), 2047-217X-3-2, 2014
The global genome biodiversity network (GGBN) data standard specification
G Droege, K Barker, O Seberg, J Coddington, E Benson, WG Berendsohn, ...
Database 2016, 2016
The plant phenology ontology: A new informatics resource for large-scale integration of plant phenology data
BJ Stucky, R Guralnick, J Deck, EG Denny, K Bolmgren, R Walls
Frontiers in Plant Science 9, 517, 2018
A call for an international network of genomic observatories (GOs)
N Davies, C Meyer, JA Gilbert, L Amaral-Zettler, J Deck, M Bicak, ...
GigaScience 1 (1), 1-5, 2012
The trouble with triplets in biodiversity informatics: a data-driven case against current identifier practices
R Guralnick, T Conlin, J Deck, BJ Stucky, N Cellinese
PloS one 9 (12), e114069, 2014
The BiSciCol Triplifier: bringing biodiversity data to the Semantic Web
BJ Stucky, J Deck, T Conlin, L Ziemba, N Cellinese, R Guralnick
BMC bioinformatics 15 (1), 1-9, 2014
The effect of urbanization on plant phenology depends on regional temperature
D Li, BJ Stucky, J Deck, B Baiser, RP Guralnick
Nature ecology & evolution 3 (12), 1661-1667, 2019
Integrating herbarium specimen observations into global phenology data systems
L Brenskelle, BJ Stucky, J Deck, R Walls, RP Guralnick
Applications in Plant Sciences 7 (3), e01231, 2019
Simulating social-ecological systems: the Island Digital Ecosystem Avatars (IDEA) consortium
N Davies, D Field, D Gavaghan, SJ Holbrook, S Planes, M Troyer, ...
GigaScience 5 (1), s13742-016-0118-5, 2016
Meeting report: advancing practical applications of biodiversity ontologies
RL Walls, R Guralnick, J Deck, A Buntzman, PL Buttigieg, N Davies, ...
Standards in Genomic Sciences 9 (1), 1-10, 2014
Lessons learned from adapting the Darwin Core vocabulary standard for use in RDF
SJ Baskauf, J Wieczorek, J Deck, CO Webb
Semantic Web 7 (6), 617-627, 2016
Meeting Report: GBIF hackathon-workshop on Darwin Core and sample data (22–24 May 2013)
J Wieczorek, O Bánki, S Blum, J Deck, M Döring, G Dröge, D Endresen, ...
Standards in Genomic Sciences 9 (3), 585-598, 2014
Meeting report: hackathon-workshop on Darwin Core and MIxS standards alignment (February 2012)
ÉÓ Tuama, J Deck, G Dröge, M Döring, D Field, R Kottmann, J Ma, H Mori, ...
Standards in Genomic Sciences 7 (1), 166-170, 2012
Field information management systems for DNA barcoding
J Deck, J Gross, S Stones-Havas, N Davies, R Shapley, C Meyer
DNA Barcodes, 255-267, 2012
Clarifying concepts and terms in biodiversity informatics
J Deck, K Barker, R Beaman, PL Buttigieg, G Dröge, R Guralnick, C Miller, ...
Standards in Genomic Sciences 8 (2), 352-359, 2013
The founding charter of the Genomic Observatories Network. GigaScience 3 (1): 2
N Davies, D Field, L Amaral-Zettler, MS Clark, J Deck, A Drummond, ...
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