Jörg Hakenberg
Jörg Hakenberg
Verified email at illumina.com - Homepage
Title
Cited by
Cited by
Year
Overview of BioCreative II gene normalization
AA Morgan, Z Lu, X Wang, AM Cohen, J Fluck, P Ruch, A Divoli, K Fundel, ...
Genome biology 9 (2), 1-19, 2008
3702008
Genomic hallmarks and structural variation in metastatic prostate cancer
DA Quigley, HX Dang, SG Zhao, P Lloyd, R Aggarwal, JJ Alumkal, A Foye, ...
Cell 174 (3), 758-769. e9, 2018
3312018
Analysis of 589,306 genomes identifies individuals resilient to severe Mendelian childhood diseases
R Chen, L Shi, J Hakenberg, B Naughton, P Sklar, J Zhang, H Zhou, ...
Nature biotechnology 34 (5), 531-538, 2016
2632016
A comprehensive benchmark of kernel methods to extract protein–protein interactions from literature
D Tikk, P Thomas, P Palaga, J Hakenberg, U Leser
PLoS computational biology 6 (7), e1000837, 2010
2092010
What makes a gene name? Named entity recognition in the biomedical literature
U Leser, J Hakenberg
Briefings in bioinformatics 6 (4), 357-369, 2005
2052005
AliBaba: PubMed as a graph
C Plake, T Schiemann, M Pankalla, J Hakenberg, U Leser
Bioinformatics 22 (19), 2444-2445, 2006
1842006
Predicting the clinical impact of human mutation with deep neural networks
L Sundaram, H Gao, SR Padigepati, JF McRae, Y Li, JA Kosmicki, ...
Nature genetics 50 (8), 1161-1170, 2018
1612018
Inter-species normalization of gene mentions with GNAT
J Hakenberg, C Plake, R Leaman, M Schroeder, G Gonzalez
Bioinformatics 24 (16), i126-i132, 2008
1502008
MAPPP: MHC class I antigenic peptide processing prediction.
J Hakenberg, AK Nussbaum, H Schild, HG Rammensee, C Kuttler, ...
Applied bioinformatics 2 (3), 155-158, 2003
1232003
Acute Intermittent Porphyria: Predicted Pathogenicity of HMBS Variants Indicates Extremely Low Penetrance of the Autosomal Dominant Disease
B Chen, C Solis‐Villa, J Hakenberg, W Qiao, RR Srinivasan, M Yasuda, ...
Human mutation 37 (11), 1215-1222, 2016
1022016
Gene mention normalization and interaction extraction with context models and sentence motifs
J Hakenberg, C Plake, L Royer, H Strobelt, U Leser, M Schroeder
Genome biology 9 (2), 1-16, 2008
922008
Introducing meta-services for biomedical information extraction
F Leitner, M Krallinger, C Rodriguez-Penagos, J Hakenberg, C Plake, ...
Genome biology 9 (2), 1-11, 2008
892008
The GNAT library for local and remote gene mention normalization
J Hakenberg, M Gerner, M Haeussler, I Solt, C Plake, M Schroeder, ...
Bioinformatics 27 (19), 2769-2771, 2011
882011
Towards effective sentence simplification for automatic processing of biomedical text
S Jonnalagadda, L Tari, J Hakenberg, C Baral, G Gonzalez
arXiv preprint arXiv:1001.4277, 2010
672010
Efficient extraction of protein-protein interactions from full-text articles
J Hakenberg, R Leaman, NH Vo, S Jonnalagadda, R Sullivan, C Miller, ...
IEEE/ACM Transactions on Computational Biology and Bioinformatics 7 (3), 481-494, 2010
542010
Finding kinetic parameters using text mining
J Hakenberg, S Schmeier, A Kowald, E Klipp, U Leser
OMICS: A Journal of Integrative Biology 8 (2), 131-152, 2004
542004
Optimizing syntax patterns for discovering protein-protein interactions
C Plake, J Hakenberg, U Leser
Proceedings of the 2005 ACM symposium on Applied computing, 195-201, 2005
512005
Disease-associated variants in different categories of disease located in distinct regulatory elements
M Ma, Y Ru, LS Chuang, NY Hsu, LS Shi, J Hakenberg, WY Cheng, ...
BMC genomics 16 (8), 1-13, 2015
502015
LLL’05 challenge: Genic interaction extraction-identification of language patterns based on alignment and finite state automata
J Hakenberg, C Plake, U Leser, H Kirsch, D Rebholz-Schuhmann
Proceedings of the 4th Learning Language in Logic workshop (LLL05), 38-45, 2005
502005
Systematic feature evaluation for gene name recognition
J Hakenberg, S Bickel, C Plake, U Brefeld, H Zahn, L Faulstich, U Leser, ...
BMC bioinformatics 6 (1), 1-11, 2005
502005
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