| Orthology detection combining clustering and synteny for very large datasets M Lechner, M Hernandez-Rosales, D Doerr, N Wieseke, A Thévenin, ... PLoS one 9 (8), e105015, 2014 | 107 | 2014 |
| Active and repressed biosynthetic gene clusters have spatially distinct chromosome states HW Nützmann, D Doerr, A Ramírez-Colmenero, JE Sotelo-Fonseca, ... Proceedings of the National Academy of Sciences 117 (24), 13800-13809, 2020 | 58 | 2020 |
| A draft human pangenome reference WW Liao, M Asri, J Ebler, D Doerr, M Haukness, G Hickey, S Lu, JK Lucas, ... Nature 617 (7960), 312-324, 2023 | 37 | 2023 |
| Gene family assignment-free comparative genomics D Doerr, A Thévenin, J Stoye BMC bioinformatics 13, 1-10, 2012 | 23 | 2012 |
| Computing the rearrangement distance of natural genomes L Bohnenkämper, MDV Braga, D Doerr, J Stoye International Conference on Research in Computational Molecular Biology, 3-18, 2020 | 18 | 2020 |
| The potential of family-free genome comparison MDV Braga, C Chauve, D Doerr, K Jahn, J Stoye, A Thévenin, R Wittler Models and Algorithms for Genome Evolution, 287-307, 2013 | 18 | 2013 |
| Identifying gene clusters by discovering common intervals in indeterminate strings D Doerr, J Stoye, S Böcker, K Jahn BMC genomics 15, 1-12, 2014 | 13 | 2014 |
| Accelerating investigation of food-borne disease outbreaks using pro-active geospatial modeling of food supply chains D Doerr, K Hu, S Renly, S Edlund, M Davis, JH Kaufman, J Lessler, ... Proceedings of the First ACM SIGSPATIAL International Workshop on Use of GIS …, 2012 | 11 | 2012 |
| GraphTeams: a method for discovering spatial gene clusters in Hi-C sequencing data T Schulz, J Stoye, D Doerr BMC genomics 19, 59-70, 2018 | 7 | 2018 |
| Comparative scaffolding and gap filling of ancient bacterial genomes applied to two ancient Yersinia pestis genomes N Luhmann, D Doerr, C Chauve Microbial genomics 3 (9), 2017 | 6 | 2017 |
| Analysis of local genome rearrangement improves resolution of ancestral genomic maps in plants DP Rubert, FV Martinez, J Stoye, D Doerr BMC genomics 21 (2), 1-11, 2020 | 5 | 2020 |
| Family-free genome comparison D Doerr, P Feijão, J Stoye Comparative genomics: methods and protocols, 331-342, 2018 | 5 | 2018 |
| Gene family-free genome comparison D Dörr PhD thesis, Universität Bielefeld, Bielefeld, Germany. 2016. https://pub …, 2015 | 5 | 2015 |
| Horizontal Gene Transfer Phylogenetics: A Random Walk Approach G Sevillya, D Doerr, Y Lerner, J Stoye, M Steel, S Snir Molecular Biology and Evolution 37 (5), 1470-1479, 2020 | 4 | 2020 |
| New Genome Similarity Measures based on Conserved Gene Adjacencies D Doerr, LAB Kowada, E Araujo, S Deshpande, S Dantas, BME Moret, ... Journal of Computational Biology 24 (6), 616-634, 2017 | 4* | 2017 |
| Stochastic errors vs. modeling errors in distance based phylogenetic reconstructions D Doerr, I Gronau, S Moran, I Yavneh Algorithms for Molecular Biology 7 (1), 1-16, 2012 | 4 | 2012 |
| Sequence-based synteny analysis of multiple large genomes D Doerr, BME Moret Comparative Genomics: Methods and Protocols, 317-329, 2018 | 3 | 2018 |
| The gene family-free median of three D Doerr, M Balaban, P Feijão, C Chauve Algorithms for Molecular Biology 12 (1), 1-14, 2017 | 3 | 2017 |
| The potential of family-free rearrangements towards gene orthology inference DP Rubert, D Doerr, MDV Braga Journal of bioinformatics and computational biology 19 (06), 2140014, 2021 | 2 | 2021 |
| Small parsimony for natural genomes in the DCJ-indel model D Doerr, C Chauve arXiv preprint arXiv:2108.04297, 2021 | 2 | 2021 |
Cedric ChauveProfessor of Mathematics, Simon Fraser UniversityVerified email at sfu.ca
