Douglas Pires
Douglas Pires
School of Computing and Information Systems, The University of Melbourne
Verified email at unimelb.edu.au - Homepage
Title
Cited by
Cited by
Year
mCSM: predicting the effects of mutations in proteins using graph-based signatures
DEV Pires, DB Ascher, TL Blundell
Bioinformatics 30 (3), 335-342, 2014
3552014
pkCSM: predicting small-molecule pharmacokinetic and toxicity properties using graph-based signatures
DEV Pires, TL Blundell, DB Ascher
Journal of medicinal chemistry 58 (9), 4066-4072, 2015
3362015
DUET: a server for predicting effects of mutations on protein stability using an integrated computational approach
DEV Pires, DB Ascher, TL Blundell
Nucleic acids research 42 (W1), W314-W319, 2014
3082014
DynaMut: predicting the impact of mutations on protein conformation, flexibility and stability
CHM Rodrigues, DEV Pires, DB Ascher
Nucleic acids research 46 (W1), W350-W355, 2018
1022018
Protein cutoff scanning: A comparative analysis of cutoff dependent and cutoff free methods for prospecting contacts in proteins
CH da Silveira, DEV Pires, RC Minardi, C Ribeiro, CJM Veloso, ...
Proteins: Structure, Function, and Bioinformatics 74 (3), 727-743, 2009
792009
Mycobacterium tuberculosis whole genome sequencing and protein structure modelling provides insights into anti-tuberculosis drug resistance
J Phelan, F Coll, R McNerney, DB Ascher, DEV Pires, N Furnham, ...
BMC medicine 14 (1), 1-13, 2016
712016
mCSM-lig: quantifying the effects of mutations on protein-small molecule affinity in genetic disease and emergence of drug resistance
DEV Pires, TL Blundell, DB Ascher
Scientific reports 6, 29575, 2016
632016
Tumour risks and genotype–phenotype correlations associated with germline variants in succinate dehydrogenase subunit genes SDHB, SDHC and SDHD
KA Andrews, DB Ascher, DEV Pires, DR Barnes, L Vialard, RT Casey, ...
Journal of medical genetics 55 (6), 384-394, 2018
612018
In silico functional dissection of saturation mutagenesis: Interpreting the relationship between phenotypes and changes in protein stability, interactions and activity
DEV Pires, J Chen, TL Blundell, DB Ascher
Scientific reports 6, 19848, 2016
612016
Twelve novel HGD gene variants identified in 99 alkaptonuria patients: focus on ‘black bone disease’in Italy
M Nemethova, J Radvanszky, L Kadasi, DB Ascher, DEV Pires, ...
European Journal of Human Genetics 24 (1), 66-72, 2016
612016
Platinum: a database of experimentally measured effects of mutations on structurally defined protein–ligand complexes
DEV Pires, TL Blundell, DB Ascher
Nucleic acids research 43 (D1), D387-D391, 2015
602015
Germline mutations in the CDKN2B tumor suppressor gene predispose to renal cell carcinoma
M Jafri, NC Wake, DB Ascher, DEV Pires, D Gentle, MR Morris, ...
Cancer discovery 5 (7), 723-729, 2015
542015
A campaign-based characterization of spamming strategies
PH Calais, DEV Pires, DO Guedes, W Meira Jr, C Hoepers, KS Jessen
532008
CSM-lig: a web server for assessing and comparing protein–small molecule affinities
DEV Pires, DB Ascher
Nucleic acids research 44 (W1), W557-W561, 2016
522016
mCSM-AB: a web server for predicting antibody–antigen affinity changes upon mutation with graph-based signatures
DEV Pires, DB Ascher
Nucleic acids research 44 (W1), W469-W473, 2016
432016
Cutoff Scanning Matrix (CSM): structural classification and function prediction by protein inter-residue distance patterns
DEV Pires, RC de Melo-Minardi, MA dos Santos, CH da Silveira, ...
BMC Genomics 12 (Suppl 4), S12, 2011
392011
mCSM–NA: predicting the effects of mutations on protein–nucleic acids interactions
DEV Pires, DB Ascher
Nucleic acids research 45 (W1), W241-W246, 2017
372017
Analysis of HGD gene mutations in patients with alkaptonuria from the United Kingdom: identification of novel mutations
JL Usher, DB Ascher, DEV Pires, AM Milan, TL Blundell, LR Ranganath
JIMD Reports, Volume 24, 3-11, 2014
342014
SDHA related tumorigenesis: a new case series and literature review for variant interpretation and pathogenicity
RT Casey, DB Ascher, E Rattenberry, L Izatt, KA Andrews, HL Simpson, ...
Molecular genetics & genomic medicine 5 (3), 237-250, 2017
302017
Variation in Human Cytochrome P-450 Drug-Metabolism Genes: A Gateway to the Understanding of Plasmodium vivax Relapses
ACR Silvino, GL Costa, FCF Ara˙jo, DB Ascher, DEV Pires, CJF Fontes, ...
PloS one 11 (7), e0160172, 2016
302016
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