| An integrated encyclopedia of DNA elements in the human genome ENCODE Project Consortium Nature 489 (7414), 57, 2012 | 13827 | 2012 |
| Integrative analysis of 111 reference human epigenomes A Kundaje, W Meuleman, J Ernst, M Bilenky, A Yen, A Heravi-Moussavi, ... Nature 518 (7539), 317-330, 2015 | 5952 | 2015 |
| Systematic localization of common disease-associated variation in regulatory DNA MT Maurano, R Humbert, E Rynes, RE Thurman, E Haugen, H Wang, ... Science 337 (6099), 1190-1195, 2012 | 3801 | 2012 |
| The accessible chromatin landscape of the human genome RE Thurman, E Rynes, R Humbert, J Vierstra, MT Maurano, E Haugen, ... Nature 489 (7414), 75-82, 2012 | 3042 | 2012 |
| A comparative encyclopedia of DNA elements in the mouse genome F Yue, Y Cheng, A Breschi, J Vierstra, W Wu, T Ryba, R Sandstrom, Z Ma, ... Nature 515 (7527), 355-364, 2014 | 1898 | 2014 |
| An expansive human regulatory lexicon encoded in transcription factor footprints S Neph, J Vierstra, AB Stergachis, AP Reynolds, E Haugen, B Vernot, ... Nature 489 (7414), 83-90, 2012 | 946 | 2012 |
| BEDOPS: high-performance genomic feature operations S Neph, MS Kuehn, AP Reynolds, E Haugen, RE Thurman, AK Johnson, ... Bioinformatics 28 (14), 1919-1920, 2012 | 882 | 2012 |
| Bioconda: sustainable and comprehensive software distribution for the life sciences B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ... Nature methods 15 (7), 475-476, 2018 | 797 | 2018 |
| Global mapping of protein-DNA interactions in vivo by digital genomic footprinting JR Hesselberth, X Chen, Z Zhang, PJ Sabo, R Sandstrom, AP Reynolds, ... Nature methods 6 (4), 283-289, 2009 | 722 | 2009 |
| Cell-of-origin chromatin organization shapes the mutational landscape of cancer P Polak, R Karlić, A Koren, R Thurman, R Sandstrom, MS Lawrence, ... Nature 518 (7539), 360-364, 2015 | 575 | 2015 |
| Circuitry and dynamics of human transcription factor regulatory networks S Neph, AB Stergachis, A Reynolds, R Sandstrom, E Borenstein, ... Cell 150 (6), 1274-1286, 2012 | 522 | 2012 |
| Foxp3 exploits a pre-existent enhancer landscape for regulatory T cell lineage specification RM Samstein, A Arvey, SZ Josefowicz, X Peng, A Reynolds, R Sandstrom, ... Cell 151 (1), 153-166, 2012 | 503 | 2012 |
| Developmental fate and cellular maturity encoded in human regulatory DNA landscapes AB Stergachis, S Neph, A Reynolds, R Humbert, B Miller, SL Paige, ... Cell 154 (4), 888-903, 2013 | 372 | 2013 |
| Native elongating transcript sequencing reveals human transcriptional activity at nucleotide resolution A Mayer, J Di Iulio, S Maleri, U Eser, J Vierstra, A Reynolds, R Sandstrom, ... Cell 161 (3), 541-554, 2015 | 368 | 2015 |
| Exonic transcription factor binding directs codon choice and affects protein evolution AB Stergachis, E Haugen, A Shafer, W Fu, B Vernot, A Reynolds, ... Science 342 (6164), 1367-1372, 2013 | 340 | 2013 |
| Mapping and dynamics of regulatory DNA and transcription factor networks in A. thaliana AM Sullivan, AA Arsovski, J Lempe, KL Bubb, MT Weirauch, PJ Sabo, ... Cell reports 8 (6), 2015-2030, 2014 | 264 | 2014 |
| Global reference mapping of human transcription factor footprints J Vierstra, J Lazar, R Sandstrom, J Halow, K Lee, D Bates, M Diegel, ... Nature 583 (7818), 729-736, 2020 | 255 | 2020 |
| Conservation of trans-acting circuitry during mammalian regulatory evolution AB Stergachis, S Neph, R Sandstrom, E Haugen, AP Reynolds, M Zhang, ... Nature 515 (7527), 365-370, 2014 | 240 | 2014 |
| Index and biological spectrum of human DNase I hypersensitive sites W Meuleman, A Muratov, E Rynes, J Halow, K Lee, D Bates, M Diegel, ... Nature 584 (7820), 244-251, 2020 | 222 | 2020 |
| Genome‐scale mapping of DNase I hypersensitivity S John, PJ Sabo, TK Canfield, K Lee, S Vong, M Weaver, H Wang, ... Current protocols in molecular biology 103 (1), 21.27. 1-21.27. 20, 2013 | 113 | 2013 |
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