Antonio Colaprico
Antonio Colaprico
Associate Scientist (University of Miami)
Verified email at med.miami.edu - Homepage
Title
Cited by
Cited by
Year
The immune landscape of cancer
V Thorsson, DL Gibbs, SD Brown, D Wolf, DS Bortone, THO Yang, ...
Immunity 48 (4), 812-830. e14, 2018
13112018
Comprehensive characterization of cancer driver genes and mutations
MH Bailey, C Tokheim, E Porta-Pardo, S Sengupta, D Bertrand, ...
Cell 173 (2), 371-385. e18, 2018
10122018
TCGAbiolinks: an R/Bioconductor package for integrative analysis of TCGA data
A Colaprico, TC Silva, C Olsen, L Garofano, C Cava, D Garolini, ...
Nucleic acids research 44 (8), e71-e71, 2016
9442016
Machine learning identifies stemness features associated with oncogenic dedifferentiation
TM Malta, A Sokolov, AJ Gentles, T Burzykowski, L Poisson, JN Weinstein, ...
Cell 173 (2), 338-354. e15, 2018
3982018
Perspective on oncogenic processes at the end of the beginning of cancer genomics
L Ding, MH Bailey, E Porta-Pardo, V Thorsson, A Colaprico, D Bertrand, ...
Cell 173 (2), 305-320. e10, 2018
1752018
Integrated proteogenomic characterization of clear cell renal cell carcinoma
DJ Clark, SM Dhanasekaran, F Petralia, J Pan, X Song, Y Hu, ...
Cell 179 (4), 964-983. e31, 2019
1102019
New functionalities in the TCGAbiolinks package for the study and integration of cancer data from GDC and GTEx
M Mounir, M Lucchetta, TC Silva, C Olsen, G Bontempi, X Chen, ...
PLoS computational biology 15 (3), e1006701, 2019
922019
TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages
TC Silva, A Colaprico, C Olsen, F D'Angelo, G Bontempi, M Ceccarelli, ...
F1000Research 5, 2016
862016
CancerSubtypes: an R/Bioconductor package for molecular cancer subtype identification, validation and visualization
T Xu, TD Le, L Liu, N Su, R Wang, B Sun, A Colaprico, G Bontempi, J Li
Bioinformatics 33 (19), 3131-3133, 2017
732017
A pan-cancer analysis reveals high-frequency genetic alterations in mediators of signaling by the TGF-β superfamily
A Korkut, S Zaidi, RS Kanchi, S Rao, NR Gough, A Schultz, X Li, ...
Cell systems 7 (4), 422-437. e7, 2018
622018
Proteogenomic characterization of endometrial carcinoma
Y Dou, EA Kawaler, DC Zhou, MA Gritsenko, C Huang, L Blumenberg, ...
Cell 180 (4), 729-748. e26, 2020
602020
Polycomb complexes associate with enhancers and promote oncogenic transcriptional programs in cancer through multiple mechanisms
HL Chan, F Beckedorff, Y Zhang, J Garcia-Huidobro, H Jiang, A Colaprico, ...
Nature communications 9 (1), 1-16, 2018
552018
Proteogenomic characterization reveals therapeutic vulnerabilities in lung adenocarcinoma
MA Gillette, S Satpathy, S Cao, SM Dhanasekaran, SV Vasaikar, K Krug, ...
Cell 182 (1), 200-225. e35, 2020
502020
Aging human hematopoietic stem cells manifest profound epigenetic reprogramming of enhancers that may predispose to leukemia
ER Adelman, HT Huang, A Roisman, A Olsson, A Colaprico, T Qin, ...
Cancer discovery 9 (8), 1080-1101, 2019
472019
Integrative analysis with Monte Carlo cross-validation reveals miRNAs regulating pathways cross-talk in aggressive breast cancer
A Colaprico, C Cava, G Bertoli, G Bontempi, I Castiglioni
BioMed research international 2015, 2015
372015
SpidermiR: an R/bioconductor package for integrative analysis with miRNA data
C Cava, A Colaprico, G Bertoli, A Graudenzi, TC Silva, C Olsen, ...
International journal of molecular sciences 18 (2), 274, 2017
362017
Integration of multiple networks and pathways identifies cancer driver genes in pan-cancer analysis
C Cava, G Bertoli, A Colaprico, C Olsen, G Bontempi, I Castiglioni
BMC genomics 19 (1), 1-16, 2018
272018
Combination of gene expression signature and model for end-stage liver disease score predicts survival of patients with severe alcoholic hepatitis
E Trépo, N Goossens, N Fujiwara, WM Song, A Colaprico, A Marot, ...
Gastroenterology 154 (4), 965-975, 2018
242018
How interacting pathways are regulated by miRNAs in breast cancer subtypes
C Cava, A Colaprico, G Bertoli, G Bontempi, G Mauri, I Castiglioni
BMC bioinformatics 17 (12), 111-133, 2016
212016
Interpreting pathways to discover cancer driver genes with Moonlight
A Colaprico, C Olsen, MH Bailey, GJ Odom, T Terkelsen, TC Silva, ...
Nature communications 11 (1), 1-17, 2020
18*2020
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