Transcriptome and Metabolite Profiling of the Infection Cycle of Zymoseptoria tritici on Wheat Reveals a Biphasic Interaction with Plant Immunity Involving … JJ Rudd, K Kanyuka, K Hassani-Pak, M Derbyshire, A Andongabo, ... Plant physiology 167 (3), 1158-1185, 2015 | 299 | 2015 |
Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen MP Menden, D Wang, MJ Mason, B Szalai, KC Bulusu, Y Guan, T Yu, ... Nature Communications 10 (2674), 2019 | 275 | 2019 |
Assessment of network module identification across complex diseases S Choobdar, ME Ahsen, J Crawford, M Tomasoni, T Fang, D Lamparter, ... Nature Methods 16, 843–852, 2019 | 244 | 2019 |
Representing and querying disease networks using graph databases A Lysenko, IA Roznovăţ, M Saqi, A Mazein, CJ Rawlings, C Auffray BioData mining 9, 1-19, 2016 | 107 | 2016 |
An integrative machine learning approach for prediction of toxicity-related drug safety A Lysenko, A Sharma, KA Boroevich, T Tsunoda Life science alliance 1 (6), 2018 | 65 | 2018 |
Developing integrated crop knowledge networks to advance candidate gene discovery K Hassani-Pak, M Castellote, M Esch, M Hindle, A Lysenko, J Taubert, ... Applied & Translational Genomics 11, 18-26, 2016 | 56 | 2016 |
Multiple Myeloma DREAM Challenge reveals epigenetic regulator PHF19 as marker of aggressive disease MJ Mason, C Schinke, CLP Eng, F Towfic, F Gruber, A Dervan, BS White, ... Leukemia 34 (7), 1866-1874, 2020 | 41 | 2020 |
DeepFeature: feature selection in nonimage data using convolutional neural network A Sharma, A Lysenko, KA Boroevich, E Vans, T Tsunoda Briefings in bioinformatics 22 (6), bbab297, 2021 | 38 | 2021 |
Genetical and comparative genomics of Brassica under altered Ca supply identifies Arabidopsis Ca-transporter orthologues N Graham, J Hammond, A Lysenko, S Mayes, S Ó Lochlainn, B Blasco, ... Plant Cell, 2014 | 36 | 2014 |
Recon2Neo4j: applying graph database technologies for managing comprehensive genome-scale networks I Balaur, A Mazein, M Saqi, A Lysenko, CJ Rawlings, C Auffray Bioinformatics 33 (7), 1096-1098, 2017 | 33 | 2017 |
A novel approach to identify genes that determine grain protein deviation in cereals EF Mosleth, Y Wan, A Lysenko, GA Chope, SP Penson, PR Shewry, ... Plant biotechnology journal 13 (5), 625-635, 2015 | 30 | 2015 |
Data integration for plant genomics—exemplars from the integration of Arabidopsis thaliana databases A Lysenko, MM Hindle, J Taubert, M Saqi, CJ Rawlings Briefings in Bioinformatics 10 (6), 676-693, 2009 | 30 | 2009 |
EpiGeNet: a graph database of interdependencies between genetic and epigenetic events in colorectal cancer I Balaur, M Saqi, A Barat, A Lysenko, A Mazein, CJ Rawlings, HJ Ruskin, ... Journal of Computational Biology 24 (10), 969-980, 2017 | 23 | 2017 |
Assessing the functional coherence of modules found in multiple-evidence networks from Arabidopsis A Lysenko, M Defoin-Platel, K Hassani-Pak, J Taubert, C Hodgman, ... BMC Bioinformatics 12 (1), 203, 2011 | 23 | 2011 |
HseSUMO: Sumoylation site prediction using half-sphere exposures of amino acids residues A Sharma, A Lysenko, Y López, A Dehzangi, R Sharma, H Reddy, ... BMC genomics 19, 1-7, 2019 | 22 | 2019 |
Comprehensive Chemometrics E Mosleth, A McLeod, I Rud, L Axelsson, L Solberg, B Moen, K Gilman, ... Elsevier: Amsterdam, The Netherlands, 2020 | 19 | 2020 |
Navigating the disease landscape: knowledge representations for contextualizing molecular signatures M Saqi, A Lysenko, YK Guo, T Tsunoda, C Auffray Briefings in bioinformatics 20 (2), 609-623, 2019 | 18 | 2019 |
Arete–candidate gene prioritization using biological network topology with additional evidence types A Lysenko, KA Boroevich, T Tsunoda BioData mining 10, 1-12, 2017 | 18 | 2017 |
Network-Based Data Integration for Selecting Candidate Virulence Associated Proteins in the Cereal Infecting Fungus Fusarium graminearum A Lysenko, M Urban, L Bennett, S Tsoka, E Janowska-Sejda, ... PLOS One 8 (7), e67926, 2013 | 17 | 2013 |
Cerebrospinal fluid proteome shows disrupted neuronal development in multiple sclerosis EF Mosleth, CA Vedeler, KH Liland, A McLeod, GH Bringeland, ... Scientific Reports 11 (1), 4087, 2021 | 16 | 2021 |