David R. Penas
David R. Penas
Postdoctoral researcher, USC
Verified email at usc.es - Homepage
Title
Cited by
Cited by
Year
Parameter estimation in large-scale systems biology models: a parallel and self-adaptive cooperative strategy
DR Penas, P González, JA Egea, R Doallo, JR Banga
BMC bioinformatics 18 (1), 1-24, 2017
492017
Enhanced parallel differential evolution algorithm for problems in computational systems biology
DR Penas, JR Banga, P González, R Doallo
Applied Soft Computing 33, 86-99, 2015
462015
A cloud-based enhanced differential evolution algorithm for parameter estimation problems in computational systems biology
D Teijeiro, XC Pardo, DR Penas, P González, JR Banga, R Doallo
Cluster Computing 20 (3), 1937-1950, 2017
192017
Parallel metaheuristics in computational biology: An asynchronous cooperative enhanced scatter search method
DR Penas, P González, JA Egea, JR Banga, R Doallo
Procedia Computer Science 51, 630-639, 2015
162015
A parallel metaheuristic for large mixed-integer dynamic optimization problems, with applications in computational biology
DR Penas, D Henriques, P González, R Doallo, J Saez-Rodriguez, ...
PloS one 12 (8), e0182186, 2017
112017
Using the cloud for parameter estimation problems: comparing Spark vs MPI with a case-study
P Gonzalez, XC Pardo, DR Penas, D Teijeiro, JR Banga, R Doallo
2017 17th IEEE/ACM International Symposium on Cluster, Cloud and Grid …, 2017
112017
A parallel differential evolution algorithm for parameter estimation in dynamic models of biological systems
DR Penas, JR Banga, P González, R Doallo
8th International Conference on Practical Applications of Computational …, 2014
82014
Evaluation of parallel differential evolution implementations on MapReduce and Spark
D Teijeiro, XC Pardo, DR Penas, P González, JR Banga, R Doallo
European Conference on Parallel Processing, 397-408, 2016
72016
A study of semantic proximity between archetype terms based on SNOMED CT relationships
JL Allones, D Penas, M Taboada, D Martinez, S Tellado
Process Support and Knowledge Representation in Health Care, 98-112, 2012
42012
Multimethod optimization in the cloud: A case‐study in systems biology modelling
P González, DR Penas, XC Pardo, JR Banga, R Doallo
Concurrency and Computation: Practice and Experience 30 (12), e4488, 2018
32018
Computational advances in polynomial optimization: RAPOSa, a freely available global solver
B González-Rodríguez, J Ossorio-Castillo, J González-Díaz, ...
Technical Report, 2020
12020
Hybrid parallel multimethod hyperheuristic for mixed-integer dynamic optimization problems in computational systems biology
P González, P Argüeso-Alejandro, DR Penas, XC Pardo, ...
The Journal of Supercomputing 75 (7), 3471-3498, 2019
12019
Enhanced global optimization methods applied to complex fisheries stock assessment models
DR Penas, A Gómez, BB Fraguela, MJ Martín, S Cervino
Applied Soft Computing 77, 50-66, 2019
12019
Multimethod optimization for reverse engineering of complex biological networks
P González, DR Penas, XC Pardo, JR Banga, R Doallo
Proceedings of the 6th International Workshop on Parallelism in …, 2018
12018
Optimization in computational systems biology via high performance computing techniques
D Rodríguez Penas
12017
Searching for genetic interactions in complex disease by using distance correlation
F Castro-Prado, J Costas, W González-Manteiga, DR Penas
arXiv preprint arXiv:2012.05285, 2020
2020
A metaheuristic penalty approach for the starting point in nonlinear programming
DR Penas, M Raydan
RAIRO-Operations Research 54 (2), 451-469, 2020
2020
Parameter estimation in large-scale systems biology models: a parallel and self-adaptive cooperative strategy (supplementary information)
DR Penas, P González, JA Egea, R Doallo, JR Banga
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Articles 1–18