| Systems-level metabolism of the altered Schaedler flora, a complete gut microbiota MB Biggs, GL Medlock, TJ Moutinho, HJ Lees, JR Swann, GL Kolling, ... The ISME journal 11 (2), 426-438, 2017 | 75 | 2017 |
| Micropatterned dermal–epidermal regeneration matrices create functional niches that enhance epidermal morphogenesis AL Clement, TJ Moutinho Jr, GD Pins Acta biomaterialia 9 (12), 9474-9484, 2013 | 74 | 2013 |
| Transcriptome-guided parsimonious flux analysis improves predictions with metabolic networks in complex environments ML Jenior, TJ Moutinho Jr, BV Dougherty, JA Papin PLoS computational biology 16 (4), e1007099, 2020 | 49 | 2020 |
| Novel co-culture plate enables growth dynamic-based assessment of contact-independent microbial interactions TJ Moutinho Jr, JC Panagides, MB Biggs, GL Medlock, GL Kolling, ... PLoS One 12 (8), e0182163, 2017 | 33 | 2017 |
| Histone deacetylase inhibition by gut microbe-generated short-chain fatty acids entrains intestinal epithelial circadian rhythms JA Fawad, DH Luzader, GF Hanson, TJ Moutinho Jr, CA McKinney, ... Gastroenterology 163 (5), 1377-1390. e11, 2022 | 28 | 2022 |
| Medusa: software to build and analyze ensembles of genome-scale metabolic network reconstructions GL Medlock, TJ Moutinho, JA Papin PLoS computational biology 16 (4), e1007847, 2020 | 22 | 2020 |
| Miniaturized plate readers for low-cost, high-throughput phenotypic screening PA Jensen, BV Dougherty, TJ Moutinho Jr, JA Papin Journal of laboratory automation 20 (1), 51-55, 2015 | 20 | 2015 |
| Accelerating the Drug Development Pipeline with Genome‐Scale Metabolic Network Reconstructions BV Dougherty, TJ Moutinho Jr, J Papin Systems Biology 6, 139-162, 2017 | 10 | 2017 |
| Gram-negative microbiota blooms in premature twins discordant for parenteral nutrition-associated cholestasis SK Hourigan, TJ Moutinho Jr, A Berenz, J Papin, P Guha, L Bangiolo, ... Journal of pediatric gastroenterology and nutrition 70 (5), 640-644, 2020 | 6 | 2020 |
| Fecal sphingolipids predict parenteral nutrition–associated cholestasis in the neonatal intensive care unit TJ Moutinho, DA Powers, GF Hanson, S Levy, R Baveja, I Hefner, ... Journal of Parenteral and Enteral Nutrition 46 (8), 1903-1913, 2022 | 5 | 2022 |
| Promoting Ecotourism in Himachal Pradesh S Agarwal, A Bhatt, N Kapoor, T Moutinho, G Van Herwarde, K Walker | 5 | 2013 |
| Quantifying cumulative phenotypic and genomic evidence for procedural generation of metabolic network reconstructions TJ Moutinho Jr, BC Neubert, ML Jenior, JA Papin PLoS Computational Biology 18 (2), e1009341, 2022 | 2 | 2022 |
| 274-Gut Microbial Metabolites Modulate the Amplitude and Phase of PER2 and BMAL1 Circadian Rhythms in Intestinal Epithelial Cells and Organoids D Luzader, TJ Moutinho, P Mitchell, J Papin, C Hong, S Moore Gastroenterology 154 (6), S-67, 2018 | 2 | 2018 |
| Functional Anabolic Network Analysis of Human-associated Lactobacillus Strains TJ Moutinho Jr, BC Neubert, ML Jenior, MA Carey, GL Medlock, ... bioRxiv, 746420, 2019 | 1 | 2019 |
| Biomarker für „Parenteral Nutrition-Associated Cho-lestasis “identifiziert TJ Moutinho Aktuel Ernahrungsmed 48, 80-87, 2023 | | 2023 |
| Los esfingolípidos fecales predicen la colestasis asociada a la nutrición parenteral en la unidad de cuidados intensivos neonatales. TJ Moutinho, DA Powers, GF Hanson, S Levy, R Baveja, I Hefner, ... | | 2022 |
| Histone deacetylase inhibition by gut microbe-generated short chain fatty acids entrains intestinal epithelial circadian rhythms DH Luzader, JA Fawad, TJ Moutinho Jr, PG Mitchell, K Brown-Steinke, ... bioRxiv, 2020.06. 09.143057, 2020 | | 2020 |
| 154–Gut Microbe-Produced Short Chain Fatty Acids Entrain Circadian Rhythms in Murine Enteroids by Histone Deacetylase Inhibition JA Fawad, D Luzader, TJ Moutinho, P Mitchell, K Brown-Steinke, JY Zhao, ... Gastroenterology 156 (6), S-36, 2019 | | 2019 |
| Parsimonious transcript data integration improves context-specific predictions of bacterial metabolism in complex environments ML Jenior, TJ Moutinho, JA Papin bioRxiv, 637124, 2019 | | 2019 |
| 746-Microbiome Changes Associated with Total Parenteral Nutrition Induced Cholestasis in Neonatal Intensive Care Unit Patients SK Hourigan, TJ Moutinho, A Berenz, P Guha, J Papin, S Orliphant, ... Gastroenterology 154 (6), S-156, 2018 | | 2018 |
