Usman Roshan
Usman Roshan
Associate Professor, Department of Computer Science, New Jersey Institute of Technology
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Citata da
Citata da
Probalign: multiple sequence alignment using partition function posterior probabilities
U Roshan, DR Livesay
Bioinformatics 22 (22), 2715-2721, 2006
Diametrical clustering for identifying anti-correlated gene clusters
IS Dhillon, EM Marcotte, U Roshan
Bioinformatics 19 (13), 1612-1619, 2003
Rec-I-DCM3: a fast algorithmic technique for reconstructing phylogenetic trees
UW Roshan, T Warnow, BME Moret, TL Williams
Proceedings. 2004 IEEE Computational Systems Bioinformatics Conference, 2004 …, 2004
Designing fast converging phylogenetic methods
L Nakhleh, U Roshan, K St. John, J Sun, T Warnow
Bioinformatics 17 (suppl_1), S190-S198, 2001
Sequence-length requirements for phylogenetic methods
BME Moret, U Roshan, T Warnow
International Workshop on Algorithms in Bioinformatics, 343-356, 2002
The accuracy of fast phylogenetic methods for large datasets
L Nakhleh, BME Moret, U Roshan, K St. John, J Sun, T Warnow
Biocomputing 2002, 211-222, 2001
Performance of supertree methods on various data set decompositions
U Roshan, BME Moret, TL Williams, T Warnow
Phylogenetic Supertrees, 301-328, 2004
Ranking causal variants and associated regions in genome-wide association studies by the support vector machine and random forest
U Roshan, S Chikkagoudar, Z Wei, K Wang, H Hakonarson
Nucleic acids research 39 (9), e62-e62, 2011
Computational grand challenges in assembling the tree of life: Problems and solutions
DA Bader, U Roshan, A Stamatakis
Advances in computers 68, 127-176, 2006
Structural and evolutionary consideration for multiple sequence alignment of RNA, and the challenges for algorithms that ignore them
KM Kjer
Sequence alignment: Methods, models, concepts, and strategies, 105-149, 2009
Reconstruction of large phylogenetic trees: a parallel approach
Z Du, F Lin, UW Roshan
Computational Biology and Chemistry 29 (4), 273-280, 2005
The relationship between maximum parsimony scores and phylogenetic tree topologies
TL Williams, BMT Berger-Wolf, U Roshan, T Warnow
Personal Communication, 2004
The performance of phylogenetic methods on trees of bounded diameter
L Nakhleh, U Roshan, KS John, J Sun, T Warnow
International Workshop on Algorithms in Bioinformatics, 214-226, 2001
Parallel divide-and-conquer phylogeny reconstruction by maximum likelihood
Z Du, A Stamatakis, F Lin, U Roshan, L Nakhleh
International Conference on High Performance Computing and Communications …, 2005
MaxSSmap: a GPU program for mapping divergent short reads to genomes with the maximum scoring subsequence
T Turki, U Roshan
BMC genomics 15 (1), 1-14, 2014
Searching for evolutionary distant RNA homologs within genomic sequences using partition function posterior probabilities
U Roshan, S Chikkagoudar, DR Livesay
BMC bioinformatics 9 (1), 61, 2008
PLAST-ncRNA: Partition function Local Alignment Search Tool for non-coding RNA sequences
S Chikkagoudar, DR Livesay, U Roshan
Nucleic acids research 38 (suppl_2), W59-W63, 2010
Improving progressive alignment for phylogeny reconstruction using parsimonious guide-trees
U Roshan, DR Livesay, S Chikkagoudar
Sixth IEEE Symposium on BioInformatics and BioEngineering (BIBE'06), 159-164, 2006
Multiple sequence alignment using Probcons and Probalign
U Roshan
Multiple Sequence Alignment Methods, 147-153, 2014
Assessing the ability of sequence-based methods to provide functional insight within membrane integral proteins: a case study analyzing the neurotransmitter/Na+ symporter family
DR Livesay, PD Kidd, S Eskandari, U Roshan
BMC bioinformatics 8 (1), 397, 2007
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