| Negative epistasis between beneficial mutations in an evolving bacterial population AI Khan, DM Dinh, D Schneider, RE Lenski, TF Cooper Science 332 (6034), 1193-1196, 2011 | 625 | 2011 |
| Parallel changes in gene expression after 20,000 generations of evolution in Escherichia coli TF Cooper, DE Rozen, RE Lenski Proceedings of the National Academy of Sciences 100 (3), 1072-1077, 2003 | 566 | 2003 |
| Second-order selection for evolvability in a large Escherichia coli population RJ Woods, JE Barrick, TF Cooper, U Shrestha, MR Kauth, RE Lenski Science 331 (6023), 1433-1436, 2011 | 364 | 2011 |
| The causes of epistasis JAGM De Visser, TF Cooper, SF Elena Proceedings of the Royal Society B: Biological Sciences 278 (1725), 3617-3624, 2011 | 242 | 2011 |
| Recombination speeds adaptation by reducing competition between beneficial mutations in populations of Escherichia coli TF Cooper PLoS biology 5 (9), e225, 2007 | 232 | 2007 |
| Postsegregational killing does not increase plasmid stability but acts to mediate the exclusion of competing plasmids TF Cooper, JA Heinemann Proceedings of the National Academy of Sciences 97 (23), 12643-12648, 2000 | 186 | 2000 |
| Experimental evolution with E. coli in diverse resource environments. I. Fluctuating environments promote divergence of replicate populations TF Cooper, RE Lenski BMC evolutionary biology 10, 1-10, 2010 | 144 | 2010 |
| Predicting microbial growth in a mixed culture from growth curve data Y Ram, E Dellus-Gur, M Bibi, K Karkare, U Obolski, MW Feldman, ... Proceedings of the National Academy of Sciences 116 (29), 14698-14707, 2019 | 142 | 2019 |
| The environment affects epistatic interactions to alter the topology of an empirical fitness landscape KM Flynn, TF Cooper, FBG Moore, VS Cooper PLoS genetics 9 (4), e1003426, 2013 | 114 | 2013 |
| Expression profiles reveal parallel evolution of epistatic interactions involving the CRP regulon in Escherichia coli TF Cooper, SK Remold, RE Lenski, D Schneider PLoS Genetics 4 (2), e35, 2008 | 98 | 2008 |
| Diminishing-returns epistasis decreases adaptability along an evolutionary trajectory A Wünsche, DM Dinh, RS Satterwhite, CD Arenas, DM Stoebel, ... Nature ecology & evolution 1 (4), 0061, 2017 | 87 | 2017 |
| Measuring Selection Coefficients Below 10−3: Method, Questions, and Prospects R Gallet, TF Cooper, SF Elena, T Lenormand Genetics 190 (1), 175-186, 2012 | 85 | 2012 |
| Adaptive Evolution of the Lactose Utilization Network in Experimentally Evolved Populations of Escherichia coli S Quan, JCJ Ray, Z Kwota, T Duong, G Balázsi, TF Cooper, RD Monds PLoS genetics 8 (1), e1002444, 2012 | 73 | 2012 |
| A negative relationship between mutation pleiotropy and fitness effect in yeast TF Cooper, EA Ostrowski, M Travisano Evolution 61 (6), 1495-1499, 2007 | 72 | 2007 |
| Systematic perturbation of cytoskeletal function reveals a linear scaling relationship between cell geometry and fitness RD Monds, TK Lee, A Colavin, T Ursell, S Quan, TF Cooper, KC Huang Cell reports 9 (4), 1528-1537, 2014 | 71 | 2014 |
| Effects of Fe nanoparticles on bacterial growth and biosurfactant production J Liu, C Vipulanandan, TF Cooper, G Vipulanandan Journal of nanoparticle research 15, 1-13, 2013 | 59 | 2013 |
| The distribution of fitness effects of new beneficial mutations in Pseudomonas fluorescens MJ McDonald, TF Cooper, HJE Beaumont, PB Rainey Biology letters 7 (1), 98-100, 2011 | 58 | 2011 |
| Effect of random and hub gene disruptions on environmental and mutational robustness in Escherichia coli TF Cooper, AP Morby, A Gunn, D Schneider Bmc Genomics 7, 1-11, 2006 | 58 | 2006 |
| Parasites and mutational load: an experimental test of a pluralistic theory for the evolution of sex TF Cooper, RE Lenski, SF Elena Proceedings of the Royal Society B: Biological Sciences 272 (1560), 311-317, 2005 | 57 | 2005 |
| Evolution of stable ecosystems in populations of digital organisms TF Cooper, C Ofria Proceedings of Artificial Life VIII, 227-232, 2002 | 56 | 2002 |
