Samuel Chaffron
Samuel Chaffron
LS2N - CNRS UMR 6004 - University of Nantes
Verified email at univ-nantes.fr - Homepage
Title
Cited by
Cited by
Year
STRING 8—a global view on proteins and their functional interactions in 630 organisms
LJ Jensen, M Kuhn, M Stark, S Chaffron, C Creevey, J Muller, T Doerks, ...
Nucleic acids research 37 (suppl_1), D412-D416, 2009
22992009
Structure and function of the global ocean microbiome
S Sunagawa, LP Coelho, S Chaffron, JR Kultima, K Labadie, G Salazar, ...
Science 348 (6237), 2015
10762015
Eukaryotic plankton diversity in the sunlit ocean
C De Vargas, S Audic, N Henry, J Decelle, F Mahé, R Logares, E Lara, ...
Science 348 (6237), 2015
9132015
Population-level analysis of gut microbiome variation
G Falony, M Joossens, S Vieira-Silva, J Wang, Y Darzi, K Faust, ...
Science 352 (6285), 560-564, 2016
9122016
Salmonella enterica serovar typhimurium exploits inflammation to compete with the intestinal microbiota
B Stecher, R Robbiani, AW Walker, AM Westendorf, M Barthel, M Kremer, ...
PLoS Biol 5 (10), e244, 2007
8722007
STRING 7—recent developments in the integration and prediction of protein interactions
C Von Mering, LJ Jensen, M Kuhn, S Chaffron, T Doerks, B Krüger, B Snel, ...
Nucleic acids research 35 (suppl_1), D358-D362, 2007
7172007
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria
N Delmotte, C Knief, S Chaffron, G Innerebner, B Roschitzki, ...
Proceedings of the National Academy of Sciences 106 (38), 16428-16433, 2009
5972009
Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice
C Knief, N Delmotte, S Chaffron, M Stark, G Innerebner, R Wassmann, ...
The ISME journal 6 (7), 1378-1390, 2012
4342012
Determinants of community structure in the global plankton interactome
G Lima-Mendez, K Faust, N Henry, J Decelle, S Colin, F Carcillo, ...
Science 348 (6237), 2015
4312015
Patterns and ecological drivers of ocean viral communities
JR Brum, JC Ignacio-Espinoza, S Roux, G Doulcier, SG Acinas, A Alberti, ...
Science 348 (6237), 2015
3882015
Like will to like: abundances of closely related species can predict susceptibility to intestinal colonization by pathogenic and commensal bacteria
B Stecher, S Chaffron, R Käppeli, S Hapfelmeier, S Freedrich, TC Weber, ...
PLoS Pathog 6 (1), e1000711, 2010
3502010
A global network of coexisting microbes from environmental and whole-genome sequence data
S Chaffron, H Rehrauer, J Pernthaler, C Von Mering
Genome research 20 (7), 947-959, 2010
3462010
Plankton networks driving carbon export in the oligotrophic ocean
L Guidi, S Chaffron, L Bittner, D Eveillard, A Larhlimi, S Roux, Y Darzi, ...
Nature 532 (7600), 465-470, 2016
3132016
The microbiota mediates pathogen clearance from the gut lumen after non-typhoidal Salmonella diarrhea
K Endt, B Stecher, S Chaffron, E Slack, N Tchitchek, A Benecke, ...
PLoS Pathog 6 (9), e1001097, 2010
2992010
Species–function relationships shape ecological properties of the human gut microbiome
S Vieira-Silva, G Falony, Y Darzi, G Lima-Mendez, RG Yunta, S Okuda, ...
Nature microbiology 1 (8), 1-8, 2016
912016
Tara Oceans coordinators
S Sunagawa, LP Coelho, S Chaffron, JR Kultima, K Labadie, G Salazar, ...
Bowler, C. de Vargas, G. Gorsky, N. Grimsley, P. Hingamp, D. Iudicone, O …, 2015
602015
The use of next generation sequencing for improving food safety: translation into practice
B Jagadeesan, P Gerner-Smidt, MW Allard, S Leuillet, A Winkler, Y Xiao, ...
Food microbiology 79, 96-115, 2019
592019
Population-level analysis of Blastocystis subtype prevalence and variation in the human gut microbiota
RY Tito, S Chaffron, C Caenepeel, G Lima-Mendez, J Wang, ...
Gut 68 (7), 1180-1189, 2019
422019
Mechanically induced development and maturation of human intestinal organoids in vivo
HM Poling, D Wu, N Brown, M Baker, TA Hausfeld, N Huynh, S Chaffron, ...
Nature biomedical engineering 2 (6), 429-442, 2018
262018
Modelling plankton ecosystems in the meta-omics era. Are we ready?
KF Stec, L Caputi, PL Buttigieg, D d'Alelio, FM Ibarbalz, MB Sullivan, ...
Marine genomics 32, 1-17, 2017
252017
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