Samuel Chaffron
TitleCited byYear
STRING 8—a global view on proteins and their functional interactions in 630 organisms
LJ Jensen, M Kuhn, M Stark, S Chaffron, C Creevey, J Muller, T Doerks, ...
Nucleic acids research 37 (suppl_1), D412-D416, 2009
21932009
Structure and function of the global ocean microbiome
S Sunagawa, LP Coelho, S Chaffron, JR Kultima, K Labadie, G Salazar, ...
Science 348 (6237), 1261359, 2015
8832015
Salmonella enterica serovar typhimurium exploits inflammation to compete with the intestinal microbiota
B Stecher, R Robbiani, AW Walker, AM Westendorf, M Barthel, M Kremer, ...
PLoS biology 5 (10), 2007
8062007
Eukaryotic plankton diversity in the sunlit ocean
C De Vargas, S Audic, N Henry, J Decelle, F Mahé, R Logares, E Lara, ...
Science 348 (6237), 1261605, 2015
7612015
STRING 7—recent developments in the integration and prediction of protein interactions
C Von Mering, LJ Jensen, M Kuhn, S Chaffron, T Doerks, B Krüger, B Snel, ...
Nucleic acids research 35 (suppl_1), D358-D362, 2007
6962007
Population-level analysis of gut microbiome variation
G Falony, M Joossens, S Vieira-Silva, J Wang, Y Darzi, K Faust, ...
Science 352 (6285), 560-564, 2016
6912016
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria
N Delmotte, C Knief, S Chaffron, G Innerebner, B Roschitzki, ...
Proceedings of the National Academy of Sciences 106 (38), 16428-16433, 2009
5352009
Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice
C Knief, N Delmotte, S Chaffron, M Stark, G Innerebner, R Wassmann, ...
The ISME journal 6 (7), 1378-1390, 2012
3552012
Determinants of community structure in the global plankton interactome
G Lima-Mendez, K Faust, N Henry, J Decelle, S Colin, F Carcillo, ...
Science 348 (6237), 1262073, 2015
3432015
Like will to like: abundances of closely related species can predict susceptibility to intestinal colonization by pathogenic and commensal bacteria
B Stecher, S Chaffron, R Käppeli, S Hapfelmeier, S Freedrich, TC Weber, ...
PLoS pathogens 6 (1), 2010
3252010
Patterns and ecological drivers of ocean viral communities
JR Brum, JC Ignacio-Espinoza, S Roux, G Doulcier, SG Acinas, A Alberti, ...
Science 348 (6237), 1261498, 2015
3192015
A global network of coexisting microbes from environmental and whole-genome sequence data
S Chaffron, H Rehrauer, J Pernthaler, C Von Mering
Genome research 20 (7), 947-959, 2010
3162010
The microbiota mediates pathogen clearance from the gut lumen after non-typhoidal Salmonella diarrhea
K Endt, B Stecher, S Chaffron, E Slack, N Tchitchek, A Benecke, ...
PLoS pathogens 6 (9), 2010
2732010
Plankton networks driving carbon export in the oligotrophic ocean
L Guidi, S Chaffron, L Bittner, D Eveillard, A Larhlimi, S Roux, Y Darzi, ...
Nature 532 (7600), 465-470, 2016
2462016
Species–function relationships shape ecological properties of the human gut microbiome
S Vieira-Silva, G Falony, Y Darzi, G Lima-Mendez, RG Yunta, S Okuda, ...
Nature microbiology 1 (8), 1-8, 2016
592016
Tara Oceans coordinators
S Sunagawa, LP Coelho, S Chaffron, JR Kultima, K Labadie, G Salazar, ...
Bowler, C. de Vargas, G. Gorsky, N. Grimsley, P. Hingamp, D. Iudicone, O …, 2015
532015
The use of next generation sequencing for improving food safety: Translation into practice
B Jagadeesan, P Gerner-Smidt, MW Allard, S Leuillet, A Winkler, Y Xiao, ...
Food microbiology 79, 96-115, 2019
282019
Termites in the woodwork
S Chaffron, C von Mering
Genome biology 8 (11), 229, 2007
212007
Modelling plankton ecosystems in the meta-omics era. Are we ready?
KF Stec, L Caputi, PL Buttigieg, D d'Alelio, FM Ibarbalz, MB Sullivan, ...
Marine genomics 32, 1-17, 2017
182017
Bacterial diversity and composition in the fluid of pitcher plants of the genus Nepenthes
Y Takeuchi, S Chaffron, MM Salcher, R Shimizu-Inatsugi, MJ Kobayashi, ...
Systematic and applied microbiology 38 (5), 330-339, 2015
172015
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Articles 1–20