Michael M. Hoffman
Michael M. Hoffman
Scientist, Princess Margaret Cancer Centre/Assistant Professor, University of Toronto
Email verificata su utoronto.ca - Home page
Titolo
Citata da
Citata da
Anno
An integrated Encyclopedia of DNA Elements in the human genome
ENCODE Project Consortium
Nature 489 (7414), 57-74, 2012
10505*2012
Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
International Chicken Genome Sequencing Consortium
Nature 432 (7018), 695-716, 2004
2327*2004
ChIP-seq guidelines and practices used by the ENCODE and modENCODE consortia
SG Landt, GK Marinov, A Kundaje, P Kheradpour, F Pauli, S Batzoglou, ...
Genome Research 22 (9), 1813-31, 2012
13052012
A user's guide to the encyclopedia of DNA elements (ENCODE)
ENCODE Project Consortium
PLoS biol 9 (4), e1001046, 2011
11602011
Opportunities and obstacles for deep learning in biology and medicine. bioRxiv
T Ching, DS Himmelstein, BK Beaulieu-Jones, AA Kalinin, BT Do, ...
New York: Wiley, 2017
543*2017
Unsupervised pattern discovery in human chromatin structure through genomic segmentation
MM Hoffman, OJ Buske, J Wang, Z Weng, JA Bilmes, WS Noble
Nature Methods 9 (5), 473, 2012
5022012
Integrative annotation of chromatin elements from ENCODE data
MM Hoffman, J Ernst, SP Wilder, A Kundaje, RS Harris, M Libbrecht, ...
Nucleic Acids Res 41 (2), 827-841, 2013
4472013
Comparative analysis of metazoan chromatin organization
JWK Ho, YL Jung, T Liu, BH Alver, S Lee, K Ikegami, KA Sohn, A Minoda, ...
Nature 512 (7515), 449-452, 2014
2812014
Sensitive tumour detection and classification using plasma cell-free DNA methylomes
SY Shen, R Singhania, G Fehringer, A Chakravarthy, MHA Roehrl, ...
Nature 563 (7732), 579-583, 2018
1322018
AANT: the Amino Acid–Nucleotide Interaction Database
MM Hoffman, MA Khrapov, JC Cox, J Yao, L Tong, AD Ellington
Nucleic Acids Research 32 (Database issue), D174-D181, 2004
1312004
Extending reference assembly models
DM Church, VA Schneider, KM Steinberg, MC Schatz, AR Quinlan, ...
Genome Biol 16, 13, 2015
1232015
Machine learning for integrating data in biology and medicine: Principles, practice, and opportunities
M Zitnik, F Nguyen, B Wang, J Leskovec, A Goldenberg, MM Hoffman
Information Fusion 50, 71-91, 2019
802019
Statistical Inference, Learning and Models in Big Data
B Franke, JF Plante, R Roscher, A Lee, C Smyth, A Hatefi, F Chen, E Gil, ...
Int Stat Rev, in press, 2016
512016
A dynamic Bayesian network for identifying protein-binding footprints from single molecule-based sequencing data
X Chen, MM Hoffman, JA Bilmes, JR Hesselberth, WS Noble
Bioinformatics 26 (12), i334-i342, 2010
512010
Joint annotation of chromatin state and chromatin conformation reveals relationships among domain types and identifies domains of cell type-specific expression
MW Libbrecht, F Ay, MM Hoffman, DM Gilbert, JA Bilmes, WS Noble
Genome Res 25 (4), 544-557, 2015
482015
Estimating the neutral rate of nucleotide substitution using introns
MM Hoffman, E Birney
Molecular Biology and Evolution 24 (2), 522-531, 2007
432007
An effective model for natural selection in promoters
MM Hoffman, E Birney
Genome Research 20 (5), 685-692, 2010
352010
Classification and interaction in random forests
D Denisko, MM Hoffman
Proceedings of the National Academy of Sciences 115 (8), 1690-1692, 2018
342018
Umap and Bismap: quantifying genome and methylome mappability
M Karimzadeh, C Ernst, A Kundaje, MM Hoffman
Nucleic acids research 46 (20), e120-e120, 2018
312018
ChromNet: learning the human chromatin network from all ENCODE ChIP-seq data
SM Lundberg, WB Tu, B Raught, LZ Penn, MM Hoffman, SI Lee
Genome Biol 17, 82, 2016
262016
Il sistema al momento non pu eseguire l'operazione. Riprova pi tardi.
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