| Determination of RNA structural diversity and its role in HIV-1 RNA splicing PJ Tomezsko, VDA Corbin, P Gupta, H Swaminathan, M Glasgow, ... Nature 582 (7812), 438-442, 2020 | 183 | 2020 |
| NOCIt: a computational method to infer the number of contributors to DNA samples analyzed by STR genotyping H Swaminathan, CM Grgicak, M Medard, DS Lun Forensic Science International: Genetics 16, 172-180, 2015 | 90 | 2015 |
| Global genome analysis reveals a vast and dynamic anellovirus landscape within the human virome CA Arze, S Springer, G Dudas, S Patel, A Bhattacharyya, H Swaminathan, ... Cell Host & Microbe 29 (8), 1305-1315. e6, 2021 | 75 | 2021 |
| CEESIt: A computational tool for the interpretation of STR mixtures H Swaminathan, A Garg, CM Grgicak, M Medard, DS Lun Forensic Science International: Genetics 22, 149-160, 2016 | 55 | 2016 |
| Viral RNA structure analysis using DMS-MaPseq P Tomezsko, H Swaminathan, S Rouskin Methods 183, 68-75, 2020 | 26 | 2020 |
| Four model variants within a continuous forensic DNA mixture interpretation framework: Effects on evidential inference and reporting H Swaminathan, MO Qureshi, CM Grgicak, K Duffy, DS Lun PloS one 13 (11), e0207599, 2018 | 24 | 2018 |
| Inferring the number of contributors to complex DNA mixtures using three methods: exploring the limits of low‐template DNA interpretation LE Alfonse, G Tejada, H Swaminathan, DS Lun, CM Grgicak Journal of forensic sciences 62 (2), 308-316, 2017 | 24 | 2017 |
| Production of high-fidelity electropherograms results in improved and consistent DNA interpretation: Standardizing the forensic validation process KC Peters, H Swaminathan, J Sheehan, KR Duffy, DS Lun, CM Grgicak Forensic Science International: Genetics 31, 160-170, 2017 | 18 | 2017 |
| Towards developing forensically relevant single-cell pipelines by incorporating direct-to-PCR extraction: compatibility, signal quality, and allele detection N Sheth, H Swaminathan, AJ Gonzalez, KR Duffy, CM Grgicak International Journal of Legal Medicine 135, 727-738, 2021 | 17 | 2021 |
| Comprehensive profiling of antibody responses to the human anellome using programmable phage display T Venkataraman, H Swaminathan, CA Arze, SM Jacobo, A Bhattacharyya, ... Cell Reports 41 (12), 2022 | 16 | 2022 |
| Anellovirus structure reveals a mechanism for immune evasion S Liou, N Cohen, Y Zhang, NM Acharekar, H Rodgers, S Islam, L Zeheb, ... Biorxiv, 2022.07. 01.498313, 2022 | 15 | 2022 |
| Establishing a stable, repeatable platform for measuring changes in sperm DNA methylation M Abbasi, AD Smith, H Swaminathan, P Sangngern, A Douglas, ... Clinical epigenetics 10, 1-12, 2018 | 11 | 2018 |
| DMS-MaPseq for genome-wide or targeted RNA structure probing in vitro and in vivo P Tomezsko, H Swaminathan, S Rouskin Functional Analysis of Long Non-Coding RNAs: Methods and Protocols, 219-238, 2021 | 10 | 2021 |
| Human anelloviruses produced by recombinant expression of synthetic genomes DM Nawandar, M Trivedi, G Bounoutas, K Lebo, C Prince, C Scano, ... Biorxiv, 2022.04. 28.489885, 2022 | 6 | 2022 |
| Equivalent T cell epitope promiscuity in ecologically diverse human pathogens KE Wiens, H Swaminathan, R Copin, DS Lun, JD Ernst PloS one 8 (8), e73124, 2013 | 4 | 2013 |
| The Development and Release of a Collection of Computational Tools and a Large-Scale Empirical Data Set for Validation: The PROVEDIt Initiative LE Alfonse, AD Garrett, H Swaminathan, KC Peters, G Wellner, ... International Symposium on Human Identification, 2016 | 3 | 2016 |
| Anelloviruses are highly diverse, ubiquitous commensal denizens of the human virome, and show promising properties as novel gene delivery vectors DM Nawanar, CA Arze, J Timpona, N Boisvert, M Trivedi, F Diaz, K Lebo, ... HUMAN GENE THERAPY 32 (19-20), A130-A130, 2021 | 1 | 2021 |
| Computational methods for the interpretation of forensic DNA samples H Swaminathan Rutgers University-Camden Graduate School, 2015 | 1 | 2015 |
| Structure of anellovirus-like particles reveal a mechanism for immune evasion S Liou, R Boggavarapu, NR Cohen, Y Zhang, I Sharma, L Zeheb, ... Nature Communications 15 (1), 7219, 2024 | | 2024 |
| Repeat RNA structure and protein interactions influence RAN translation and neurodegenerative phenotypes in models of FTD and ALS I Malik, H Swaminathan, S Rouskin, PK Todd Alzheimer's & Dementia 19, e063489, 2023 | | 2023 |
