Dominique Lavenier
Dominique Lavenier
Email verificata su irisa.fr - Home page
TitoloCitata daAnno
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species
KR Bradnam, JN Fass, A Alexandrov, P Baranay, M Bechner, I Birol, ...
GigaScience 2 (1), 10, 2013
5212013
Assemblathon 1: a competitive assessment of de novo short read assembly methods
D Earl, K Bradnam, JS John, A Darling, D Lin, J Fass, HOK Yu, V Buffalo, ...
Genome research 21 (12), 2224-2241, 2011
4862011
DSK: k-mer counting with very low memory usage
G Rizk, D Lavenier, R Chikhi
Bioinformatics 29 (5), 652-653, 2013
1912013
Critical assessment of metagenome interpretation—a benchmark of metagenomics software
A Sczyrba, P Hofmann, P Belmann, D Koslicki, S Janssen, J Drge, ...
Nature methods 14 (11), 1063, 2017
1842017
Evaluation of the streams-C C-to-FPGA compiler: an applications perspective
J Frigo, M Gokhale, D Lavenier
Proceedings of the 2001 ACM/SIGDA ninth international symposium on Field…, 2001
1442001
GASSST: global alignment short sequence search tool
G Rizk, D Lavenier
Bioinformatics 26 (20), 2534-2540, 2010
922010
Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
F Legeai, G Rizk, T Walsh, O Edwards, K Gordon, D Lavenier, N Leterme, ...
BMC genomics 11 (1), 281, 2010
782010
SAMBA: hardware accelerator for biological sequence comparison
P Guerdoux-Jamet, D Lavenier
Bioinformatics 13 (6), 609-615, 1997
751997
Rapid transcriptional plasticity of duplicated gene clusters enables a clonally reproducing aphid to colonise diverse plant species
TC Mathers, Y Chen, G Kaithakottil, F Legeai, ST Mugford, ...
Genome biology 18 (1), 27, 2017
672017
Samba: Systolic accelerator for molecular biological applications
D Lavenier
INRIA/IRISA report, 1996
671996
Reference-free compression of high throughput sequencing data with a probabilistic de Bruijn graph
G Benoit, C Lemaitre, D Lavenier, E Drezen, T Dayris, R Uricaru, G Rizk
BMC bioinformatics 16 (1), 288, 2015
612015
Using blocks of skewers for faster computation of pixel purity index
JP Theiler, DD Lavenier, NR Harvey, SJ Perkins, JJ Szymanski
Imaging Spectrometry VI 4132, 61-71, 2000
562000
Systolic array processors
J McCanny
the International Comference on Systolic arrays, 1989
54*1989
GATB: genome assembly & analysis tool box
E Drezen, G Rizk, R Chikhi, C Deltel, C Lemaitre, P Peterlongo, ...
Bioinformatics 30 (20), 2959-2961, 2014
532014
PLAST: parallel local alignment search tool for database comparison
H Van Nguyen, D Lavenier
BMC bioinformatics 10 (1), 329, 2009
532009
GPU accelerated RNA folding algorithm
G Rizk, D Lavenier, S Rajopadhye
GPU Computing Gems Emerald Edition, 199-210, 2011
522011
Compareads: comparing huge metagenomic experiments
N Maillet, C Lemaitre, R Chikhi, D Lavenier, P Peterlongo
BMC bioinformatics 13 (19), S10, 2012
512012
Experience with a hybrid processor: K-means clustering
M Gokhale, J Frigo, K Mccabe, J Theiler, C Wolinski, D Lavenier
The Journal of Supercomputing 26 (2), 131-148, 2003
502003
FPGA implementation of the k-means clustering algorithm for hyperspectral images
D Lavenier
Los Alamos National Laboratory LAUR, 2000
482000
Seed-based genomic sequence comparison using a FPGA/FLASH accelerator
D Lavenier, L Xinchun, G Georges
2006 IEEE International Conference on Field Programmable Technology, 41-48, 2006
472006
Il sistema al momento non pu eseguire l'operazione. Riprova pi tardi.
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