| Cell Size at S Phase Initiation: An Emergent Property of the G1/S Network M Barberis, E Klipp, M Vanoni, L Alberghina PLoS computational biology 3 (4), e64, 2007 | 148 | 2007 |
| The yeast cyclin-dependent kinase inhibitor Sic1 and mammalian p27Kip1 are functional homologues with a structurally conserved inhibitory domain M Barberis, L De Gioia, M Ruzzene, S Sarno, P Coccetti, P Fantucci, ... Biochemical Journal 387 (3), 639-647, 2005 | 104 | 2005 |
| ROS networks: designs, aging, Parkinson’s disease and precision therapies A N. Kolodkin, RP Sharma, AM Colangelo, A Ignatenko, F Martorana, ... NPJ systems biology and applications 6 (1), 34, 2020 | 56 | 2020 |
| Towards a systems biology approach to mammalian cell cycle: modeling the entrance into S phase of quiescent fibroblasts after serum stimulation R Alfieri, M Barberis, F Chiaradonna, D Gaglio, L Milanesi, M Vanoni, ... BMC bioinformatics 10, 1-15, 2009 | 53 | 2009 |
| Conserved forkhead dimerization motif controls DNA replication timing and spatial organization of chromosomes in S. cerevisiae AZ Ostrow, R Kalhor, Y Gan, SK Villwock, C Linke, M Barberis, L Chen, ... Proceedings of the National Academy of Sciences 114 (12), E2411-E2419, 2017 | 51 | 2017 |
| Simulation of stimulation: cytokine dosage and cell cycle crosstalk driving timing-dependent T cell differentiation M Barberis, T Helikar, P Verbruggen Frontiers in physiology 9, 879, 2018 | 47 | 2018 |
| A Mechanistic Computational Model Reveals That Plasticity of CD4+ T Cell Differentiation Is a Function of Cytokine Composition and Dosage BL Puniya, RG Todd, A Mohammed, DM Brown, M Barberis, T Helikar Frontiers in physiology 9, 878, 2018 | 44 | 2018 |
| Sic1 plays a role in timing and oscillatory behaviour of B-type cyclins M Barberis, C Linke, MŔ Adrover, A González-Novo, H Lehrach, ... Biotechnology advances 30 (1), 108-130, 2012 | 43 | 2012 |
| Computer-aided whole-cell design: taking a holistic approach by integrating synthetic with systems biology L Marucci, M Barberis, J Karr, O Ray, PR Race, M de Souza Andrade, ... Frontiers in Bioengineering and Biotechnology 8, 942, 2020 | 39 | 2020 |
| Predictable irreversible switching between acute and chronic inflammation A Abudukelimu, M Barberis, FA Redegeld, N Sahin, HV Westerhoff Frontiers in immunology 9, 1596, 2018 | 36 | 2018 |
| A Clb/Cdk1-mediated regulation of Fkh2 synchronizes CLB expression in the budding yeast cell cycle C Linke, A Chasapi, A González-Novo, I Al Sawad, S Tognetti, E Klipp, ... NPJ systems biology and applications 3 (1), 7, 2017 | 35 | 2017 |
| Fkh1 and Fkh2 associate with Sir2 to control CLB2 transcription under normal and oxidative stress conditions C Linke, E Klipp, H Lehrach, M Barberis, S Krobitsch Frontiers in physiology 4, 173, 2013 | 32 | 2013 |
| Sic1 as a timer of Clb cyclin waves in the yeast cell cycle–design principle of not just an inhibitor M Barberis The FEBS Journal 279 (18), 3386-3410, 2012 | 32 | 2012 |
| Sirtuins-mediated system-level regulation of mammalian tissues at the interface between metabolism and cell cycle: a systematic review P Maissan, EJ Mooij, M Barberis Biology 10 (3), 194, 2021 | 31 | 2021 |
| A model for the spatiotemporal organization of DNA replication in Saccharomyces cerevisiae TW Spiesser, E Klipp, M Barberis Molecular Genetics and Genomics 282, 25-35, 2009 | 31 | 2009 |
| Integrative computational approach identifies drug targets in CD4+ T-cell-mediated immune disorders BL Puniya, R Amin, B Lichter, R Moore, A Ciurej, SJ Bennett, AR Shah, ... NPJ systems biology and applications 7 (1), 4, 2021 | 28 | 2021 |
| CK2 regulates in vitro the activity of the yeast cyclin-dependent kinase inhibitor Sic1 M Barberis, MA Pagano, L De Gioia, O Marin, M Vanoni, LA Pinna, ... Biochemical and biophysical research communications 336 (4), 1040-1048, 2005 | 27 | 2005 |
| Replication origins and timing of temporal replication in budding yeast: how to solve the conundrum? M Barberis, T W. Spiesser, E Klipp Current genomics 11 (3), 199-211, 2010 | 26 | 2010 |
| Insights into the network controlling the G1/S transition in budding yeast M Barberis, E Klipp Genome Informatics 18, 85-99, 2007 | 22 | 2007 |
| Advances and challenges in logical modeling of cell cycle regulation: perspective for multi-scale, integrative yeast cell models M Barberis, RG Todd, L van der Zee Yeast Research 17 (1), fow103, 2017 | 20 | 2017 |
