| MetaboAnalyst 4.0: towards more transparent and integrative metabolomics analysis J Chong, O Soufan, C Li, I Caraus, S Li, G Bourque, DS Wishart, J Xia Nucleic acids research 46 (W1), W486-W494, 2018 | 3686 | 2018 |
| NetworkAnalyst 3.0: a visual analytics platform for comprehensive gene expression profiling and meta-analysis G Zhou, O Soufan, J Ewald, REW Hancock, N Basu, J Xia Nucleic acids research 47 (W1), W234-W241, 2019 | 1604 | 2019 |
| miRNet 2.0: network-based visual analytics for miRNA functional analysis and systems biology L Chang, G Zhou, O Soufan, J Xia Nucleic acids research 48 (W1), W244-W251, 2020 | 696 | 2020 |
| Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen MP Menden, D Wang, MJ Mason, B Szalai, KC Bulusu, Y Guan, T Yu, ... Nature communications 10 (1), 2674, 2019 | 325 | 2019 |
| DWFS: A Wrapper Feature Selection Tool Based on a Parallel Genetic Algorithm O Soufan, D Kleftogiannis, P Kalnis, VB Bajic PLOS ONE, 2015 | 143 | 2015 |
| DASPfind: new efficient method to predict drug–target interactions W Ba-Alawi, O Soufan, M Essack, P Kalnis, VB Bajic Journal of cheminformatics 8, 1-9, 2016 | 102 | 2016 |
| DPubChem: a web tool for QSAR modeling and high-throughput virtual screening O Soufan, W Ba-Alawi, A Magana-Mora, M Essack, VB Bajic Scientific reports 8 (1), 9110, 2018 | 56 | 2018 |
| Transcriptome and physiological analysis reveal alterations in muscle metabolisms and immune responses of grass carp (Ctenopharyngodon idellus) cultured at different stocking … H Zhao, O Soufan, J Xia, R Tang, L Li, D Li Aquaculture 503, 186-197, 2019 | 45 | 2019 |
| EcoToxModules: custom gene sets to organize and analyze toxicogenomics data from ecological species JD Ewald, O Soufan, D Crump, M Hecker, J Xia, N Basu Environmental Science & Technology 54 (7), 4376-4387, 2020 | 35 | 2020 |
| FastBMD: an online tool for rapid benchmark dose–response analysis of transcriptomics data J Ewald, O Soufan, J Xia, N Basu Bioinformatics 37 (7), 1035-1036, 2021 | 33 | 2021 |
| DRABAL: novel method to mine large high-throughput screening assays using Bayesian active learning O Soufan, W Ba-Alawi, M Afeef, M Essack, P Kalnis, VB Bajic Journal of cheminformatics 8, 1-14, 2016 | 27 | 2016 |
| Mining chemical activity status from high-throughput screening assays O Soufan, W Ba-Alawi, M Afeef, M Essack, V Rodionov, P Kalnis, VB Bajic PloS one 10 (12), e0144426, 2015 | 27 | 2015 |
| A novel graph mining approach to predict and evaluate food-drug interactions MM Rahman, SM Vadrev, A Magana-Mora, J Levman, O Soufan Scientific reports 12 (1), 1061, 2022 | 25 | 2022 |
| T1000: a reduced gene set prioritized for toxicogenomic studies O Soufan, J Ewald, C Viau, D Crump, M Hecker, N Basu, J Xia PeerJ 7, e7975, 2019 | 23 | 2019 |
| Development of a Comprehensive Toxicity Pathway Model for 17α-Ethinylestradiol in Early Life Stage Fathead Minnows (Pimephales promelas) AJG Alcaraz, D Potesil, K Mikulasek, D Green, B Park, C Burbridge, ... Environmental Science & Technology 55 (8), 5024-5036, 2021 | 21 | 2021 |
| DANNP: an efficient artificial neural network pruning tool M Alshahrani, O Soufan, A Magana-Mora, VB Bajic PeerJ Computer Science 3, e137, 2017 | 18 | 2017 |
| EcoToxXplorer: Leveraging Design Thinking to Develop a Standardized Web‐Based Transcriptomics Analytics Platform for Diverse Users. O Soufan, J Ewald, G Zhou, O Hacariz, E Boulanger, AJ Alcaraz, G Hickey, ... Environmental Toxicology & Chemistry 41 (1), 2022 | 14 | 2022 |
| Systematic selection of chemical fingerprint features improves the Gibbs energy prediction of biochemical reactions M Alazmi, H Kuwahara, O Soufan, L Ding, X Gao Bioinformatics 35 (15), 2634-2643, 2019 | 13 | 2019 |
| Characterizing toxicity pathways of fluoxetine to predict adverse outcomes in adult fathead minnows (Pimephales promelas) C Colville, AJ Alcaraz, D Green, B Park, J Xia, O Soufan, P Hruṧka, ... Science of the Total Environment 817, 152747, 2022 | 9 | 2022 |
| Hepatic transcriptomic responses to ethinylestradiol in two life stages of Japanese quail YS Jeon, D Crump, E Boulanger, O Soufan, B Park, N Basu, M Hecker, ... Environmental Toxicology and Chemistry 41 (11), 2769-2781, 2022 | 4 | 2022 |
Jianguo (Jeff) XiaAssociate Professor & Canada Research Chair, McGill UniversityVerified email at mcgill.ca
