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Rafael Silva Rocha
Rafael Silva Rocha
Founder and CTO at ByMyCell
Email verificata su bymycell.com - Home page
Titolo
Citata da
Citata da
Anno
The Standard European Vector Architecture (SEVA): a coherent platform for the analysis and deployment of complex prokaryotic phenotypes
R Silva-Rocha, E Martínez-García, B Calles, M Chavarría, ...
Nucleic acids research 41 (D1), D666-D675, 2013
6622013
Comparative metabolism of cellulose, sophorose and glucose in Trichoderma reeseiusing high-throughput genomic and proteomic analyses
L dos Santos Castro, WR Pedersoli, ACC Antoniêto, AS Steindorff, ...
Biotechnology for biofuels 7, 1-18, 2014
1372014
Noise and robustness in prokaryotic regulatory networks
R Silva-Rocha, V de Lorenzo
Annual review of microbiology 64, 257-275, 2010
1252010
The post-genomic era of Trichoderma reesei: what's next?
VK Gupta, AS Steindorff, RG de Paula, R Silva-Rocha, AR Mach-Aigner, ...
Trends in Biotechnology 34 (12), 970-982, 2016
1062016
Mining logic gates in prokaryotic transcriptional regulation networks
R Silva-Rocha, V de Lorenzo
FEBS letters 582 (8), 1237-1244, 2008
1042008
Understanding the role of the master regulator XYR1 in Trichoderma reesei by global transcriptional analysis
L dos Santos Castro, RG de Paula, ACC Antonieto, GF Persinoti, ...
Frontiers in microbiology 7, 183748, 2016
812016
Synthetic biology approaches to improve biocatalyst identification in metagenomic library screening
ME Guazzaroni, R Silva‐Rocha, RJ Ward
Microbial Biotechnology 8 (1), 52-64, 2015
802015
The art of vector engineering: towards the construction of next‐generation genetic tools
LC Nora, CA Westmann, L Martins‐Santana, LF Alves, LMO Monteiro, ...
Microbial biotechnology 12 (1), 125-147, 2019
792019
Galectin-3 impacts Cryptococcus neoformans infection through direct antifungal effects
F Almeida, JM Wolf, TA Da Silva, CM DeLeon-Rodriguez, CP Rezende, ...
Nature communications 8 (1), 1968, 2017
732017
Defining the genome-wide role of CRE1 during carbon catabolite repression in Trichoderma reesei using RNA-Seq analysis
ACC Antoniêto, L dos Santos Castro, R Silva-Rocha, GF Persinoti, ...
Fungal genetics and biology 73, 93-103, 2014
732014
The private life of environmental bacteria: pollutant biodegradation at the single cell level
PI Nikel, R Silva‐Rocha, I Benedetti, V de Lorenzo
Environmental microbiology 16 (3), 628-642, 2014
722014
Transcriptomic fingerprinting of Pseudomonas putida under alternative physiological regimes
J Kim, JC Oliveros, PI Nikel, V de Lorenzo, R Silva‐Rocha
Environmental microbiology reports 5 (6), 883-891, 2013
672013
The Aspergillus fumigatus CrzA Transcription Factor Activates Chitin Synthase Gene Expression during the Caspofungin Paradoxical Effect
LNA Ries, MC Rocha, PA De Castro, R Silva-Rocha, RN Silva, FZ Freitas, ...
MBio 8 (3), 10.1128/mbio. 00705-17, 2017
652017
Expression pattern of cellulolytic and xylanolytic genes regulated by transcriptional factors XYR1 and CRE1 are affected by carbon source in Trichoderma reesei
L dos Santos Castro, ACC Antoniêto, WR Pedersoli, R Silva-Rocha, ...
Gene Expression Patterns 14 (2), 88-95, 2014
562014
Loving the poison: the methylcitrate cycle and bacterial pathogenesis
SK Dolan, A Wijaya, SM Geddis, DR Spring, R Silva-Rocha, M Welch
Microbiology 164 (3), 251-259, 2018
532018
The impact of chromatin remodelling on cellulase expression in Trichoderma reesei
TM Mello-de-Sousa, A Rassinger, ME Pucher, L dos Santos Castro, ...
BMC genomics 16, 1-11, 2015
482015
Systems and synthetic biology approaches to engineer fungi for fine chemical production
L Martins-Santana, LC Nora, A Sanches-Medeiros, GL Lovate, ...
Frontiers in Bioengineering and Biotechnology 6, 117, 2018
432018
The regulatory logic of m‐xylene biodegradation by Pseudomonas putida mt‐2 exposed by dynamic modelling of the principal node Ps/Pr of the TOL plasmid
M Koutinas, MC Lam, A Kiparissides, R Silva‐Rocha, M Godinho, ...
Environmental microbiology 12 (6), 1705-1718, 2010
432010
A toolset of constitutive promoters for metabolic engineering of Rhodosporidium toruloides
LC Nora, M Wehrs, J Kim, JF Cheng, A Tarver, BA Simmons, J Magnuson, ...
Microbial Cell Factories 8, 117, 2019
422019
Trichoderma Reesei CRE1-Mediated Carbon Catabolite Repression in Response to Sophorose Through RNA Sequencing Analysis
A Cristina Campos Antonieto, RG de Paula, L dos Santos Castro, ...
Current Genomics 17 (2), 119-131, 2016
402016
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