|The major genetic determinants of HIV-1 control affect HLA class I peptide presentation|
Science (New York, NY) 330 (6010), 1551, 2010
|Naturally occurring dominant resistance mutations to hepatitis C virus protease and polymerase inhibitors in treatment‐naive patients|
T Kuntzen, J Timm, A Berical, N Lennon, AM Berlin, SK Young, B Lee, ...
Hepatology 48 (6), 1769-1778, 2008
|Increased HIV-1 vaccine efficacy against viruses with genetic signatures in Env V2|
M Rolland, PT Edlefsen, BB Larsen, S Tovanabutra, E Sanders-Buell, ...
Nature 490 (7420), 417, 2012
|HIV-1 adaptation to NK-cell-mediated immune pressure|
G Alter, D Heckerman, A Schneidewind, L Fadda, CM Kadie, JM Carlson, ...
Nature 476 (7358), 96, 2011
|Founder effects in the assessment of HIV polymorphisms and HLA allele associations|
T Bhattacharya, M Daniels, D Heckerman, B Foley, N Frahm, C Kadie, ...
science 315 (5818), 1583-1586, 2007
|Influence of HLA-C expression level on HIV control|
R Apps, Y Qi, JM Carlson, H Chen, X Gao, R Thomas, Y Yuki, ...
Science 340 (6128), 87-91, 2013
|Transmission of HIV-1 Gag immune escape mutations is associated with reduced viral load in linked recipients|
PA Goepfert, W Lumm, P Farmer, P Matthews, A Prendergast, JM Carlson, ...
Journal of Experimental Medicine 205 (5), 1009-1017, 2008
|Marked epitope-and allele-specific differences in rates of mutation in human immunodeficiency type 1 (HIV-1) Gag, Pol, and Nef cytotoxic T-lymphocyte epitopes in acute/early …|
ZL Brumme, CJ Brumme, J Carlson, H Streeck, M John, Q Eichbaum, ...
Journal of virology 82 (18), 9216, 2008
|Selection bias at the heterosexual HIV-1 transmission bottleneck|
JM Carlson, M Schaefer, DC Monaco, R Batorsky, DT Claiborne, J Prince, ...
Science 345 (6193), 1254031, 2014
|Evidence of differential HLA class I-mediated viral evolution in functional and accessory/regulatory genes of HIV-1|
ZL Brumme, CJ Brumme, D Heckerman, BT Korber, M Daniels, J Carlson, ...
PLoS pathogens 3 (7), e94, 2007
|Central role of reverting mutations in HLA associations with human immunodeficiency virus set point|
PC Matthews, A Prendergast, A Leslie, H Crawford, R Payne, ...
Journal of virology 82 (17), 8548-8559, 2008
|HLA-associated immune escape pathways in HIV-1 subtype B Gag, Pol and Nef proteins|
ZL Brumme, M John, JM Carlson, CJ Brumme, D Chan, MA Brockman, ...
PloS one 4 (8), e6687, 2009
|Additive contribution of HLA class I alleles in the immune control of HIV-1 infection|
A Leslie, PC Matthews, J Listgarten, JM Carlson, C Kadie, T Ndung'u, ...
Journal of virology 84 (19), 9879-9888, 2010
|HLA class I-driven evolution of human immunodeficiency virus type 1 subtype c proteome: immune escape and viral load|
CM Rousseau, MG Daniels, JM Carlson, C Kadie, H Crawford, ...
Journal of virology 82 (13), 6434-6446, 2008
|Phylogenetic dependency networks: inferring patterns of CTL escape and codon covariation in HIV-1 Gag|
JM Carlson, ZL Brumme, CM Rousseau, CJ Brumme, P Matthews, ...
PLoS computational biology 4 (11), e1000225, 2008
|Protective HLA class I alleles that restrict acute-phase CD8+ T-cell responses are associated with viral escape mutations located in highly conserved regions of human …|
YE Wang, B Li, JM Carlson, H Streeck, AD Gladden, R Goodman, ...
Journal of virology 83 (4), 1845-1855, 2009
|Genetic characterization of human immunodeficiency virus type 1 in elite controllers: lack of gross genetic defects or common amino acid changes|
T Miura, MA Brockman, CJ Brumme, ZL Brumme, JM Carlson, F Pereyra, ...
Journal of virology 82 (17), 8422-8430, 2008
|Early selection in Gag by protective HLA alleles contributes to reduced HIV-1 replication capacity that may be largely compensated for in chronic infection|
MA Brockman, ZL Brumme, CJ Brumme, T Miura, J Sela, PC Rosato, ...
Journal of virology 84 (22), 11937-11949, 2010
|SCOPE: a web server for practical de novo motif discovery|
JM Carlson, A Chakravarty, CE DeZiel, RH Gross
Nucleic acids research 35 (suppl_2), W259-W264, 2007
|Widespread impact of HLA restriction on immune control and escape pathways of HIV-1|
JM Carlson, J Listgarten, N Pfeifer, V Tan, C Kadie, BD Walker, T Ndung'u, ...
Journal of virology 86 (9), 5230-5243, 2012