| Multiplexed labeling of genomic loci with dCas9 and engineered sgRNAs using CRISPRainbow H Ma, LC Tu, A Naseri, M Huisman, S Zhang, D Grunwald, T Pederson Nature biotechnology 34 (5), 528-530, 2016 | 465 | 2016 |
| Multicolor CRISPR labeling of chromosomal loci in human cells H Ma, A Naseri, P Reyes-Gutierrez, SA Wolfe, S Zhang, T Pederson Proceedings of the National Academy of Sciences 112 (10), 3002-3007, 2015 | 458 | 2015 |
| CRISPR-Cas9 nuclear dynamics and target recognition in living cells H Ma, LC Tu, A Naseri, M Huisman, S Zhang, D Grunwald, T Pederson Journal of Cell Biology 214 (5), 529-537, 2016 | 200 | 2016 |
| CRISPR-Sirius: RNA scaffolds for signal amplification in genome imaging H Ma, LC Tu, A Naseri, YC Chung, D Grunwald, S Zhang, T Pederson Nature methods 15 (11), 928-931, 2018 | 135 | 2018 |
| Cas9 effector-mediated regulation of transcription, differentiation and gene editing/labeling SA Wolfe, H Ma, T Pederson, MSK Enuameh, NA Kearns, RMJ Genga, ... US Patent App. 14/571,818, 2015 | 87 | 2015 |
| RaPID: ultra-fast, powerful, and accurate detection of segments identical by descent (IBD) in biobank-scale cohorts A Naseri, X Liu, K Tang, S Zhang, D Zhi Genome biology 20, 1-15, 2019 | 53 | 2019 |
| Cell cycle–and genomic distance–dependent dynamics of a discrete chromosomal region H Ma, LC Tu, YC Chung, A Naseri, D Grunwald, S Zhang, T Pederson Journal of Cell Biology 218 (5), 1467-1477, 2019 | 41 | 2019 |
| Simultaneous epigenetic perturbation and genome imaging reveal distinct roles of H3K9me3 in chromatin architecture and transcription Y Feng, Y Wang, X Wang, X He, C Yang, A Naseri, T Pederson, J Zheng, ... Genome biology 21, 1-24, 2020 | 37 | 2020 |
| Personalized genealogical history of UK individuals inferred from biobank-scale IBD segments A Naseri, K Tang, X Geng, J Shi, J Zhang, P Shakya, X Liu, S Zhang, ... BMC biology 19, 1-12, 2021 | 14 | 2021 |
| Efficient haplotype matching between a query and a panel for genealogical search A Naseri, E Holzhauser, D Zhi, S Zhang Bioinformatics 35 (14), i233-i241, 2019 | 12 | 2019 |
| Multi-allelic positional Burrows-Wheeler transform A Naseri, D Zhi, S Zhang BMC bioinformatics 20, 1-8, 2019 | 10 | 2019 |
| RAFFI: accurate and fast familial relationship inference in large scale biobank studies using RaPID A Naseri, J Shi, X Lin, S Zhang, D Zhi PLoS Genetics 17 (1), e1009315, 2021 | 8 | 2021 |
| Discovery of runs-of-homozygosity diplotype clusters and their associations with diseases in uk biobank A Naseri, D Zhi, S Zhang medRxiv, 2020 | 7 | 2020 |
| Syllable-PBWT for space-efficient haplotype long-match query V Wang, A Naseri, S Zhang, D Zhi Bioinformatics 39 (1), btac734, 2023 | 5 | 2023 |
| Efficient haplotype block matching in bi-directional pbwt A Naseri, W Yue, S Zhang, D Zhi 21st International Workshop on Algorithms in Bioinformatics (WABI 2021), 2021 | 5 | 2021 |
| Open-source benchmarking of IBD segment detection methods for biobank-scale cohorts K Tang, A Naseri, Y Wei, S Zhang, D Zhi GigaScience 11, giac111, 2022 | 4 | 2022 |
| P-smoother: efficient PBWT smoothing of large haplotype panels W Yue, A Naseri, V Wang, P Shakya, S Zhang, D Zhi Bioinformatics Advances 2 (1), vbac045, 2022 | 4 | 2022 |
| Ultra-fast Identity by Descent Detection in Biobank-Scale Cohorts using Positional Burrows–Wheeler Transform A Naseri, X Liu, S Zhang, D Zhi bioRxiv, 103325, 2017 | 4 | 2017 |
| FiMAP: A fast identity-by-descent mapping test for Biobank-scale cohorts H Chen, A Naseri, D Zhi Plos Genetics 19 (12), e1011057, 2023 | 2 | 2023 |
| Methods and system for efficient indexing for genetic genealogical discovery in large genotype databases D Zhi, S Zhang, A Naseri, A Sanaullah, E Holzhauser US Patent 11,848,073, 2023 | 1 | 2023 |
