Segui
Metin Balaban
Titolo
Citata da
Citata da
Anno
TreeCluster: Clustering biological sequences using phylogenetic trees
M Balaban, N Moshiri, U Mai, X Jia, S Mirarab
PloS one 14 (8), e0221068, 2019
1112019
APPLES: scalable distance-based phylogenetic placement with or without alignments
M Balaban, S Sarmashghi, S Mirarab
Systematic Biology 69 (3), 566-578, 2020
602020
Multi-level analysis of the gut–brain axis shows autism spectrum disorder-associated molecular and microbial profiles
JT Morton, DM Jin, RH Mills, Y Shao, G Rahman, D McDonald, Q Zhu, ...
Nature neuroscience 26 (7), 1208-1217, 2023
382023
Greengenes2 unifies microbial data in a single reference tree
D McDonald, Y Jiang, M Balaban, K Cantrell, Q Zhu, A Gonzalez, ...
Nature biotechnology, 1-4, 2023
332023
Fast and accurate distance‐based phylogenetic placement using divide and conquer
M Balaban, Y Jiang, D Roush, Q Zhu, S Mirarab
Molecular Ecology Resources 22 (3), 1213-1227, 2022
292022
In Vivo Imaging of the Segregation of the 2 Chromosomes and the Cell Division Proteins of Rhodobacter sphaeroides Reveals an Unexpected Role for MipZ
N Dubarry, CR Willis, G Ball, C Lesterlin, JP Armitage
MBio 10 (1), 10.1128/mbio. 02515-18, 2019
252019
DEPP: deep learning enables extending species trees using single genes
Y Jiang, M Balaban, Q Zhu, S Mirarab
Systematic biology 72 (1), 17-34, 2023
232023
Estimating repeat spectra and genome length from low-coverage genome skims with RESPECT
S Sarmashghi, M Balaban, E Rachtman, B Touri, S Mirarab, V Bafna
PLoS computational biology 17 (11), e1009449, 2021
212021
The impact of contaminants on the accuracy of genome skimming and the effectiveness of exclusion read filters
E Rachtman, M Balaban, V Bafna, S Mirarab
Molecular Ecology Resources 20 (3), 649-661, 2020
172020
Greengenes2 enables a shared data universe for microbiome studies
D McDonald, Y Jiang, M Balaban, K Cantrell, Q Zhu, A Gonzalez, ...
bioRxiv, 2022.12. 19.520774, 2022
132022
Phylogenetic double placement of mixed samples
M Balaban, S Mirarab
Bioinformatics 36 (Supplement_1), i335-i343, 2020
82020
Simulated annealing algorithm for graph coloring
A Kose, BA Sonmez, M Balaban
arXiv preprint arXiv:1712.00709, 2017
72017
The gene family-free median of three
D Doerr, M Balaban, P Feijão, C Chauve
Algorithms for Molecular Biology 12, 1-14, 2017
42017
Genome-wide alignment-free phylogenetic distance estimation under a no strand-bias model
M Balaban, NA Bristy, A Faisal, MS Bayzid, S Mirarab
Bioinformatics Advances 2 (1), vbac055, 2022
32022
Generation of accurate, expandable phylogenomic trees with uDance
M Balaban, Y Jiang, Q Zhu, D McDonald, R Knight, S Mirarab
Nature biotechnology, 1-10, 2023
22023
Distance-based phylogenetic placement with statistical support
NB Hasan, M Balaban, A Biswas, MS Bayzid, S Mirarab
Biology 11 (8), 1212, 2022
12022
Fast and accurate branch support calculation for distance-based phylogenetic placements
NB Hasan, A Biswas, M Balaban, S Mirarab, MS Bayzid
RECOMB International Workshop on Comparative Genomics, 33-51, 2022
12022
Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics
C Ma, M Balaban, J Liu, S Chen, L Ding, B Raphael
bioRxiv, 2024.03. 09.584244, 2024
2024
Distance-aware Algorithms for Scalable Evolutionary and Ecological Analyses
M Balaban
UC San Diego, 2022
2022
Supporting Information for The gene family-free median of three
D Doerr, P Feijao, M Balaban, C Chauve
2016
Il sistema al momento non può eseguire l'operazione. Riprova più tardi.
Articoli 1–20