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Karthik Shekhar
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Highly parallel genome-wide expression profiling of individual cells using nanoliter droplets
EZ Macosko, A Basu, R Satija, J Nemesh, K Shekhar, M Goldman, I Tirosh, ...
Cell 161 (5), 1202-1214, 2015
66912015
Single-cell RNA-seq reveals new types of human blood dendritic cells, monocytes, and progenitors
AC Villani, R Satija, G Reynolds, S Sarkizova, K Shekhar, J Fletcher, ...
Science 356 (6335), eaah4573, 2017
21232017
A single-cell survey of the small intestinal epithelium
AL Haber, M Biton, N Rogel, RH Herbst, K Shekhar, C Smillie, G Burgin, ...
Nature 551 (7680), 333-339, 2017
13462017
Comprehensive classification of retinal bipolar neurons by single-cell transcriptomics
K Shekhar, SW Lapan, IE Whitney, NM Tran, EZ Macosko, M Kowalczyk, ...
Cell 166 (5), 1308-1323. e30, 2016
10762016
Massively parallel single-nucleus RNA-seq with DroNc-seq
N Habib, I Avraham-Davidi, A Basu, T Burks, K Shekhar, M Hofree, ...
Nature methods 14 (10), 955-958, 2017
9022017
Molecular, spatial, and functional single-cell profiling of the hypothalamic preoptic region
JR Moffitt, D Bambah-Mukku, SW Eichhorn, E Vaughn, K Shekhar, ...
Science 362 (6416), eaau5324, 2018
8552018
Therapeutic efficacy of potent neutralizing HIV-1-specific monoclonal antibodies in SHIV-infected rhesus monkeys
DH Barouch, JB Whitney, B Moldt, F Klein, TY Oliveira, J Liu, ...
Nature 503 (7475), 224-228, 2013
7842013
Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis
JA Farrell, Y Wang, SJ Riesenfeld, K Shekhar, A Regev, AF Schier
Science 360 (6392), eaar3131, 2018
6772018
T helper cell cytokines modulate intestinal stem cell renewal and differentiation
M Biton, AL Haber, N Rogel, G Burgin, S Beyaz, A Schnell, O Ashenberg, ...
Cell 175 (5), 1307-1320. e22, 2018
4412018
Single-cell profiles of retinal ganglion cells differing in resilience to injury reveal neuroprotective genes
NM Tran, K Shekhar, IE Whitney, A Jacobi, I Benhar, G Hong, W Yan, ...
Neuron 104 (6), 1039-1055. e12, 2019
4232019
Molecular classification and comparative taxonomics of foveal and peripheral cells in primate retina
YR Peng, K Shekhar, W Yan, D Herrmann, A Sappington, GS Bryman, ...
Cell 176 (5), 1222-1237. e22, 2019
3722019
Magnitude and kinetics of CD8+ T cell activation during hyperacute HIV infection impact viral set point
ZM Ndhlovu, P Kamya, N Mewalal, HN Kløverpris, T Nkosi, K Pretorius, ...
Immunity 43 (3), 591-604, 2015
2772015
Automatic classification of cellular expression by nonlinear stochastic embedding (ACCENSE)
K Shekhar, P Brodin, MM Davis, AK Chakraborty
Proceedings of the National Academy of Sciences 111 (1), 202-207, 2014
2372014
Coordinate linkage of HIV evolution reveals regions of immunological vulnerability
V Dahirel, K Shekhar, F Pereyra, T Miura, M Artyomov, S Talsania, ...
Proceedings of the National Academy of Sciences 108 (28), 11530-11535, 2011
2182011
Coordinate linkage of HIV evolution reveals regions of immunological vulnerability
V Dahirel, K Shekhar, F Pereyra, T Miura, M Artyomov, S Talsania, ...
Proceedings of the National Academy of Sciences 108 (28), 11530-11535, 2011
2182011
Cell atlas of the human fovea and peripheral retina
W Yan, YR Peng, T van Zyl, A Regev, K Shekhar, D Juric, JR Sanes
Scientific reports 10 (1), 9802, 2020
1612020
Hydrophobic CDR3 residues promote the development of self-reactive T cells
BD Stadinski, K Shekhar, I Gómez-Touriño, J Jung, K Sasaki, AK Sewell, ...
Nature immunology 17 (8), 946-955, 2016
1412016
Comprehensive identification and spatial mapping of habenular neuronal types using single-cell RNA-seq
S Pandey, K Shekhar, A Regev, AF Schier
Current Biology 28 (7), 1052-1065. e7, 2018
1372018
Cell atlas of aqueous humor outflow pathways in eyes of humans and four model species provides insight into glaucoma pathogenesis
T van Zyl, W Yan, A McAdams, YR Peng, K Shekhar, A Regev, D Juric, ...
Proceedings of the National Academy of Sciences 117 (19), 10339-10349, 2020
1202020
Continuous immunotypes describe human immune variation and predict diverse responses
KJ Kaczorowski, K Shekhar, D Nkulikiyimfura, CL Dekker, H Maecker, ...
Proceedings of the National Academy of Sciences 114 (30), E6097-E6106, 2017
1172017
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