Nathan T. Weeks
Nathan T. Weeks
Harvard University, Iowa State University, USDA Agricultural Research Service
Verified email at iastate.edu - Homepage
Title
Cited by
Cited by
Year
De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis
BJ Haas, A Papanicolaou, M Yassour, M Grabherr, PD Blood, J Bowden, ...
Nature protocols 8 (8), 1494-1512, 2013
37442013
High-throughput SNP discovery through deep resequencing of a reduced representation library to anchor and orient scaffolds in the soybean whole genome sequence
DL Hyten, SB Cannon, Q Song, N Weeks, EW Fickus, RC Shoemaker, ...
BMC genomics 11 (1), 38, 2010
2522010
Complementary genetic and genomic approaches help characterize the linkage group I seed protein QTL in soybean
YT Bolon, B Joseph, SB Cannon, MA Graham, BW Diers, AD Farmer, ...
BMC Plant Biology 10 (1), 41, 2010
962010
A comprehensive transcriptome assembly of pigeonpea (Cajanus cajan L.) using sanger and second-generation sequencing platforms
H Kudapa, AK Bharti, SB Cannon, AD Farmer, B Mulaosmanovic, ...
Molecular plant 5 (5), 1020-1028, 2012
912012
Legume information system (LegumeInfo. org): a key component of a set of federated data resources for the legume family
S Dash, JD Campbell, EKS Cannon, AM Cleary, W Huang, SR Kalberer, ...
Nucleic acids research 44 (D1), D1181-D1188, 2016
652016
Comprehensive characterization and RNA-Seq profiling of the HD-Zip transcription factor family in soybean (Glycine max) during dehydration and salt stress
V Belamkar, NT Weeks, AK Bharti, AD Farmer, MA Graham, SB Cannon
BMC genomics 15 (1), 950, 2014
542014
The genome sequence of segmental allotetraploid peanut Arachis hypogaea
DJ Bertioli, J Jenkins, J Clevenger, O Dudchenko, D Gao, G Seijo, ...
Nature genetics 51 (5), 877-884, 2019
342019
Gene expression patterns are correlated with genomic and genic structure in soybean
JL Woody, AJ Severin, YT Bolon, B Joseph, BW Diers, AD Farmer, ...
Genome 54 (1), 10-18, 2011
252011
Discovery of biological networks using an optimized partial correlation coefficient with information theory algorithm on Stampede's Xeon and Xeon Phi processors
L Koesterke, JE Koltes, NT Weeks, K Milfeld, MW Vaughn, JM Reecy, ...
Concurrency and Computation: Practice and Experience 26 (13), 2178-2190, 2014
172014
High-performance epistasis detection in quantitative trait GWAS
NT Weeks, GR Luecke, BM Groth, M Kraeva, L Ma, LM Kramer, JE Koltes, ...
The International Journal of High Performance Computing Applications 32 (3 …, 2018
152018
Genome‐wide methylation profile following prenatal and postnatal dietary omega‐3 fatty acid supplementation in pigs
RL Boddicker, JE Koltes, ER Fritz‐Waters, L Koesterke, N Weeks, T Yin, ...
Animal Genetics 47 (6), 658-671, 2016
152016
Optimizing the PCIT algorithm on stampede's Xeon and Xeon Phi processors for faster discovery of biological networks
L Koesterke, K Milfeld, MW Vaughn, D Stanzione, JE Koltes, NT Weeks, ...
Proceedings of the conference on extreme science and engineering discovery …, 2013
152013
Genomics-assisted characterization of a breeding collection of Apios americana, an edible tuberous legume
V Belamkar, AD Farmer, NT Weeks, SR Kalberer, WJ Blackmon, ...
Scientific reports 6, 34908, 2016
92016
Fast epistasis detection in large-scale GWAS for intel xeon Phi clusters
GR Luecke, NT Weeks, BM Groth, M Kraeva, L Ma, LM Kramer, JE Koltes, ...
2015 IEEE Trustcom/BigDataSE/ISPA 3, 228-235, 2015
92015
GeoWall: Investigations into low-cost stereo display systems
D Steinwand, B Davis, N Weeks
USGS Open File Report, 03-198, 2002
82002
Optimization of SAMtools sorting using OpenMP tasks
NT Weeks, GR Luecke
Cluster Computing 20 (3), 1869-1880, 2017
52017
Epistatic interactions associated with fatty acid concentrations of beef from angus sired beef cattle
LM Kramer, MAA Ghaffar, JE Koltes, ER Fritz-Waters, MS Mayes, ...
BMC genomics 17 (1), 891, 2016
32016
Ten quick tips for sharing open genomic data
AV Brown, JD Campbell, T Assefa, D Grant, RT Nelson, NT Weeks, ...
PLOS Computational Biology 14 (12), e1006472, 2018
12018
Challenges in Developing MPI Fault-Tolerant Fortran Applications
N Weeks, G Luecke, P Maris, J Vary
2018 IEEE International Conference on Cluster Computing (CLUSTER), 524-531, 2018
12018
Comparing Allinea's and Intel's performance tools for HPC
GR Luecke, BM Groth, NT Weeks, M Kraeva
Proceedings of the 25th High Performance Computing Symposium, 3, 2017
12017
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