| DeepARG: a deep learning approach for predicting antibiotic resistance genes from metagenomic data G Arango-Argoty, E Garner, A Pruden, LS Heath, P Vikesland, L Zhang Microbiome 6, 1-15, 2018 | 562 | 2018 |
| Secure coding practices in java: Challenges and vulnerabilities N Meng, S Nagy, D Yao, W Zhuang, GA Argoty Proceedings of the 40th International Conference on Software Engineering …, 2018 | 172 | 2018 |
| An in-depth map of polyadenylation sites in cancer Y Lin, Z Li, F Ozsolak, SW Kim, G Arango-Argoty, TT Liu, SA Tenenbaum, ... Nucleic acids research 40 (17), 8460-8471, 2012 | 160 | 2012 |
| NanoARG: a web service for detecting and contextualizing antimicrobial resistance genes from nanopore-derived metagenomes GA Arango-Argoty, D Dai, A Pruden, P Vikesland, LS Heath, L Zhang Microbiome 7, 1-18, 2019 | 78 | 2019 |
| Metagenomic profiling of historic Colorado Front Range flood impact on distribution of riverine antibiotic resistance genes E Garner, JS Wallace, GA Argoty, C Wilkinson, N Fahrenfeld, LS Heath, ... Scientific reports 6 (1), 38432, 2016 | 72 | 2016 |
| MetaStorm: a public resource for customizable metagenomics annotation G Arango-Argoty, G Singh, LS Heath, A Pruden, W Xiao, L Zhang PloS one 11 (9), e0162442, 2016 | 66 | 2016 |
| ARGminer: a web platform for the crowdsourcing-based curation of antibiotic resistance genes GA Arango-Argoty, GKP Guron, E Garner, MV Riquelme, LS Heath, ... Bioinformatics 36 (9), 2966-2973, 2020 | 47 | 2020 |
| Apigenin Impacts the Growth of the Gut Microbiota and Alters the Gene Expression of Enterococcus M Wang, J Firrman, L Zhang, G Arango-Argoty, P Tomasula, LS Liu, ... Molecules 22 (8), 1292, 2017 | 46 | 2017 |
| The effect of quercetin on genetic expression of the commensal gut microbes Bifidobacterium catenulatum, Enterococcus caccae and Ruminococcus gauvreauii J Firrman, LS Liu, L Zhang, GA Argoty, M Wang, P Tomasula, M Kobori, ... Anaerobe 42, 130-141, 2016 | 45 | 2016 |
| Identification of discriminatory antibiotic resistance genes among environmental resistomes using extremely randomized tree algorithm S Gupta, G Arango-Argoty, L Zhang, A Pruden, P Vikesland Microbiome 7, 1-15, 2019 | 42 | 2019 |
| Effects of dairy manure-based amendments and soil texture on lettuce-and radish-associated microbiota and resistomes GKP Guron, G Arango-Argoty, L Zhang, A Pruden, MA Ponder Msphere 4 (3), 10.1128/msphere. 00239-19, 2019 | 41 | 2019 |
| Demonstrating a comprehensive wastewater-based surveillance approach that differentiates globally sourced resistomes MV Prieto Riquelme, E Garner, S Gupta, J Metch, N Zhu, MF Blair, ... Environmental Science & Technology 56 (21), 14982-14993, 2022 | 29 | 2022 |
| Comparison of whole-genome sequences of Legionella pneumophila in tap water and in clinical strains, Flint, Michigan, USA, 2016 E Garner, CL Brown, DO Schwake, WJ Rhoads, G Arango-Argoty, ... Emerging infectious diseases 25 (11), 2013, 2019 | 26 | 2019 |
| Noncoding RNAs that associate with YB-1 alter proliferation in prostate cancer cells TT Liu, G Arango-Argoty, Z Li, Y Lin, SW Kim, A Dueck, F Ozsolak, ... Rna 21 (6), 1159-1172, 2015 | 25 | 2015 |
| Analysis of temporal changes in growth and gene expression for commensal gut microbes in response to the polyphenol naringenin J Firrman, LS Liu, GA Argoty, L Zhang, P Tomasula, M Wang, S Pontious, ... Microbiology insights 11, 1178636118775100, 2018 | 20 | 2018 |
| Enhanced GII. 4 human norovirus infection in gnotobiotic pigs transplanted with a human gut microbiota S Lei, EL Twitchell, AK Ramesh, T Bui, E Majette, CM Tin, R Avery, ... Journal of General Virology 100 (11), 1530-1540, 2019 | 19 | 2019 |
| Triclosan has a robust, yet reversible impact on human gut microbial composition in vitro KK Mahalak, J Firrman, JJ Lee, K Bittinger, A Nuñez, LM Mattei, H Zhang, ... Plos one 15 (6), e0234046, 2020 | 13 | 2020 |
| Wastewater based epidemiology enabled surveillance of antibiotic resistance MV Riquelme, E Garner, S Gupta, J Metch, N Zhu, MF Blair, ... medRxiv, 2021.06. 01.21258164, 2021 | 11 | 2021 |
| A Pilot Study of Chicago Waterways as Reservoirs of Multidrug-Resistant Enterobacteriaceae (MDR-Ent) in a High-Risk Region for Community-Acquired MDR-Ent … LK Logan, L Zhang, SJ Green, S Dorevitch, GA Arango-Argoty, K Reme, ... Antimicrobial Agents and Chemotherapy 64 (4), 10.1128/aac. 02310-19, 2020 | 8 | 2020 |
| Explainable transformer-based neural network for the prediction of survival outcomes in non-small cell lung cancer (NSCLC) E Kipkogei, GA Arango Argoty, I Kagiampakis, A Patra, E Jacob medRxiv, 2021.10. 11.21264761, 2021 | 7 | 2021 |
