Paola Bonizzoni

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Gianluca Della VedovaUniversità degli Studi di Milano-BicoccaVerified email at dellavedova.org
Riccardo DondiUniversità degli studi di BergamoVerified email at unibg.it
Raffaella RizziRicercatore confermato in Informatica, Università degli Studi di Milano-BicoccaVerified email at disco.unimib.it
Yuri PirolaAssociate professor at DISCo, Univ. of Milano-BicoccaVerified email at unimib.it
Giancarlo MauriProfessor emeritus of Computer Science - University of Milano-BicoccaVerified email at unimib.it
Rosalba ZizzaRicercatore INF/01, Univ. di SalernoVerified email at dia.unisa.it
Clelia De FeliceProfessor of Computer Science, University of SalernoVerified email at dia.unisa.it
Stefano BerettaSan Raffaele Telethon Institute for Gene TherapyVerified email at hsr.it
Simone CiccolellaUniversity of Study Milano-BicoccaVerified email at unimib.it
Graziano PesoleProfessor of Molecular Biology, Università degli Studi di Bari and National Research CouncilVerified email at uniba.it
Murray PattersonAssistant Professor, Georgia State UniversityVerified email at cs.gsu.edu
Picardi ErnestoFull Professor of Molecular BiologyVerified email at uniba.it
Simone ZaccariaGroup Leader, University College London, Cancer InstituteVerified email at ucl.ac.uk
Gunnar W. KlauHeinrich Heine University DüsseldorfVerified email at hhu.de
Nadia PisantiUniversity of Pisa & Erable Team INRIAVerified email at di.unipi.it
Gabriella TruccoAssistant Professor, Università degli Studi di MilanoVerified email at unimi.it
Giulia BernardiniAssistant Professor at the University of TriesteVerified email at unimib.it
Tao JiangUC RiversideVerified email at cs.ucr.edu
Claudio FerrettiAssociate Professor of Computer Science, Milano-Bicocca UniversityVerified email at disco.unimib.it
Anna Paola CarrieriManager & Research Scientist at IBM ResearchVerified email at uk.ibm.com

Paola Bonizzoni

University of Milano Bicocca

Verified email at unimib.it

Computer science Bioinformatics


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
The complexity of multiple sequence alignment with SP-score that is a metric P Bonizzoni, G Della Vedova Theoretical Computer Science 259 (1-2), 63-79, 2001	190	2001
The haplotyping problem: an overview of computational models and solutions P Bonizzoni, G Della Vedova, R Dondi, J Li Journal of Computer Science and Technology 18, 675-688, 2003	158	2003
Reconciling a gene tree to a species tree under the duplication cost model P Bonizzoni, G Della Vedova, R Dondi Theoretical computer science 347 (1-2), 36-53, 2005	99	2005
ASPicDB: a database resource for alternative splicing analysis T Castrignanò, M D’Antonio, A Anselmo, D Carrabino, A D’Onorio De Meo, ... Bioinformatics 24 (10), 1300-1304, 2008	60	2008
HapCol: accurate and memory-efficient haplotype assembly from long reads Y Pirola, S Zaccaria, R Dondi, GW Klau, N Pisanti, P Bonizzoni Bioinformatics 32 (11), 1610-1617, 2016	58	2016
Experimenting an approximation algorithm for the LCS P Bonizzoni, G Della Vedova, G Mauri Discrete Applied Mathematics 110 (1), 13-24, 2001	54	2001
ASPIC: a novel method to predict the exon-intron structure of a gene that is optimally compatible to a set of transcript sequences P Bonizzoni, R Rizzi, G Pesole BMC bioinformatics 6, 1-16, 2005	51	2005
ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing PL Martelli, M D’Antonio, P Bonizzoni, T Castrignano, AM D’Erchia, ... Nucleic acids research 39 (suppl_1), D80-D85, 2010	49	2010
Overlap graphs and de Bruijn graphs: data structures for de novo genome assembly in the big data era R Rizzi, S Beretta, M Patterson, Y Pirola, M Previtali, G Della Vedova, ... Quantitative Biology 7, 278-292, 2019	48	2019
Inferring cancer progression from single-cell sequencing while allowing mutation losses S Ciccolella, C Ricketts, M Soto Gomez, M Patterson, D Silverbush, ... Bioinformatics 37 (3), 326-333, 2021	47	2021
Computational graph pangenomics: a tutorial on data structures and their applications JA Baaijens, P Bonizzoni, C Boucher, G Della Vedova, Y Pirola, R Rizzi, ... Natural Computing 21 (1), 81-108, 2022	46	2022
ASGAL: aligning RNA-Seq data to a splicing graph to detect novel alternative splicing events L Denti, R Rizzi, S Beretta, GD Vedova, M Previtali, P Bonizzoni BMC bioinformatics 19, 1-21, 2018	44	2018
On the approximation of correlation clustering and consensus clustering P Bonizzoni, G Della Vedova, R Dondi, T Jiang Journal of Computer and System Sciences 74 (5), 671-696, 2008	43	2008
Exemplar longest common subsequence P Bonizzoni, G Della Vedova, R Dondi, G Fertin, R Rizzi, S Vialette IEEE/ACM Transactions on Computational Biology and Bioinformatics 4 (4), 535-543, 2007	43	2007
ASPIC: a web resource for alternative splicing prediction and transcript isoforms characterization T Castrignano, R Rizzi, IG Talamo, PDO De Meo, A Anselmo, P Bonizzoni, ... Nucleic Acids Research 34 (suppl_2), W440-W443, 2006	41	2006
Separating some splicing models P Bonizzoni, C Ferretti, G Mauri, R Zizza Information Processing Letters 79 (6), 255-259, 2001	41	2001
On the minimum error correction problem for haplotype assembly in diploid and polyploid genomes P Bonizzoni, R Dondi, GW Klau, Y Pirola, N Pisanti, S Zaccaria Journal of Computational Biology 23 (9), 718-736, 2016	40	2016
Variants of constrained longest common subsequence P Bonizzoni, G Della Vedova, R Dondi, Y Pirola Information Processing Letters 110 (20), 877-881, 2010	38	2010
An approximation algorithm for the shortest common supersequence problem: an experimental analysis P Barone, P Bonizzoni, GD Vedova, G Mauri Proceedings of the 2001 ACM symposium on applied computing, 56-60, 2001	37	2001
Further steps in TANGO: improved taxonomic assignment in metagenomics D Alonso-Alemany, A Barré, S Beretta, P Bonizzoni, M Nikolski, ... Bioinformatics 30 (1), 17-23, 2014	35	2014

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