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Shila Ghazanfar
Shila Ghazanfar
Lecturer, ARC DECRA Fellow, The University of Sydney
Verified email at sydney.edu.au - Homepage
Title
Cited by
Cited by
Year
The human body at cellular resolution: the NIH Human Biomolecular Atlas Program
Caltech-UW TMC Cai Long lcai@ caltech. edu 21 b Shendure Jay 9 Trapnell Cole ...
Nature 574 (7777), 187-192, 2019
3692019
Circulating cytokines predict immune-related toxicity in melanoma patients receiving anti-PD-1–based immunotherapy
SY Lim, JH Lee, TN Gide, AM Menzies, A Guminski, MS Carlino, EJ Breen, ...
Clinical Cancer Research 25 (5), 1557-1563, 2019
2962019
Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics
C Muus, MD Luecken, G Eraslan, L Sikkema, A Waghray, G Heimberg, ...
Nature medicine 27 (3), 546-559, 2021
2932021
Integration of spatial and single-cell transcriptomic data elucidates mouse organogenesis
T Lohoff, S Ghazanfar, A Missarova, N Koulena, N Pierson, JA Griffiths, ...
Nature biotechnology 40 (1), 74-85, 2022
182*2022
scMerge leverages factor analysis, stable expression, and pseudoreplication to merge multiple single-cell RNA-seq datasets
Y Lin, S Ghazanfar, KYX Wang, JA Gagnon-Bartsch, KK Lo, X Su, ZG Han, ...
Proceedings of the National Academy of Sciences 116 (20), 9775-9784, 2019
1412019
Toward a common coordinate framework for the human body
JE Rood, T Stuart, S Ghazanfar, T Biancalani, E Fisher, A Butler, ...
Cell 179 (7), 1455-1467, 2019
842019
SpatialExperiment: infrastructure for spatially-resolved transcriptomics data in R using Bioconductor
D Righelli, LM Weber, HL Crowell, B Pardo, L Collado-Torres, ...
Bioinformatics 38 (11), 3128-3131, 2022
632022
Evaluating stably expressed genes in single cells
Y Lin, S Ghazanfar, D Strbenac, A Wang, E Patrick, D Lin, T Speed, ...
Gigascience, 2019
58*2019
Investigating higher-order interactions in single-cell data with scHOT
S Ghazanfar, Y Lin, X Su, DM Lin, E Patrick, ZG Han, JC Marioni, ...
Nature methods 17 (8), 799-806, 2020
562020
Diverse routes toward early somites in the mouse embryo
C Guibentif, JA Griffiths, I Imaz-Rosshandler, S Ghazanfar, J Nichols, ...
Developmental cell 56 (1), 141-153. e6, 2021
522021
Coordinated changes in gene expression kinetics underlie both mouse and human erythroid maturation
M Barile, I Imaz-Rosshandler, I Inzani, S Ghazanfar, J Nichols, JC Marioni, ...
Genome biology 22, 1-22, 2021
382021
Clonal evolution in liver cancer at single-cell and single-variant resolution
X Su, L Zhao, Y Shi, R Zhang, Q Long, S Bai, Q Luo, Y Lin, X Zou, ...
Journal of Hematology & Oncology 14, 1-5, 2021
332021
KinasePA: Phosphoproteomics data annotation using hypothesis driven kinase perturbation analysis
P Yang, E Patrick, SJ Humphrey, S Ghazanfar, DE James, R Jothi, ...
Proteomics 16 (13), 1868-1871, 2016
332016
Tuning of delta-protocadherin adhesion through combinatorial diversity
AJ Bisogni, S Ghazanfar, EO Williams, HM Marsh, JYH Yang, DM Lin
Elife 7, e41050, 2018
292018
Systematic functional identification of cancer multi-drug resistance genes
MT Lau, S Ghazanfar, A Parkin, A Chou, JR Rouaen, JB Littleboy, ...
Genome biology 21, 1-12, 2020
282020
Integrated single cell data analysis reveals cell specific networks and novel coactivation markers
S Ghazanfar, AJ Bisogni, JT Ormerod, DM Lin, JYH Yang
BMC systems biology 10, 11-24, 2016
282016
Stabilized mosaic single-cell data integration using unshared features
S Ghazanfar, C Guibentif, JC Marioni
Nature Biotechnology, 1-9, 2023
20*2023
geneBasis: an iterative approach for unsupervised selection of targeted gene panels from scRNA-seq
A Missarova, J Jain, A Butler, S Ghazanfar, T Stuart, M Brusko, ...
Genome biology 22, 1-22, 2021
182021
Mutational and transcriptomic landscapes of a rare human prostate basal cell carcinoma
X Su, Q Long, J Bo, Y Shi, LN Zhao, Y Lin, Q Luo, S Ghazanfar, C Zhang, ...
The Prostate 80 (6), 508-517, 2020
142020
Mesp1 controls the chromatin and enhancer landscapes essential for spatiotemporal patterning of early cardiovascular progenitors
X Lin, B Swedlund, MLN Ton, S Ghazanfar, C Guibentif, C Paulissen, ...
Nature cell biology 24 (7), 1114-1128, 2022
112022
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