Shila Ghazanfar
Shila Ghazanfar
Research Associate, CRUK Cambridge Institute
Verified email at - Homepage
Cited by
Cited by
Circulating cytokines predict immune-related toxicity in melanoma patients receiving anti-PD-1–based immunotherapy
SY Lim, JH Lee, TN Gide, AM Menzies, A Guminski, MS Carlino, EJ Breen, ...
Clinical Cancer Research 25 (5), 1557-1563, 2019
The human body at cellular resolution: the NIH Human Biomolecular Atlas Program
HuBMAP Consortium
Nature 574 (7777), 187, 2019
scMerge leverages factor analysis, stable expression, and pseudoreplication to merge multiple single-cell RNA-seq datasets
Y Lin, S Ghazanfar, KYX Wang, JA Gagnon-Bartsch, KK Lo, X Su, ZG Han, ...
Proceedings of the National Academy of Sciences 116 (20), 9775-9784, 2019
Evaluating stably expressed genes in single cells
Y Lin, S Ghazanfar, D Strbenac, A Wang, E Patrick, D Lin, T Speed, ...
Gigascience, 2019
Toward a common coordinate framework for the human body
JE Rood, T Stuart, S Ghazanfar, T Biancalani, E Fisher, A Butler, ...
Cell 179 (7), 1455-1467, 2019
Integrated single cell data analysis reveals cell specific networks and novel coactivation markers
S Ghazanfar, AJ Bisogni, JT Ormerod, DM Lin, JYH Yang
BMC systems biology 10 (5), 11-24, 2016
KinasePA: Phosphoproteomics data annotation using hypothesis driven kinase perturbation analysis
P Yang, E Patrick, SJ Humphrey, S Ghazanfar, DE James, R Jothi, ...
Proteomics 16 (13), 1868-1871, 2016
Tuning of delta-protocadherin adhesion through combinatorial diversity
AJ Bisogni, S Ghazanfar, EO Williams, HM Marsh, JYH Yang, DM Lin
Elife 7, e41050, 2018
Gene expression allelic imbalance in ovine brown adipose tissue impacts energy homeostasis
S Ghazanfar, T Vuocolo, JL Morrison, LM Nicholas, IC McMillen, ...
PloS one 12 (6), e0180378, 2017
Characterizing mutation–expression network relationships in multiple cancers
S Ghazanfar, JYH Yang
Computational biology and chemistry 63, 73-82, 2016
Investigating higher-order interactions in single-cell data with scHOT
S Ghazanfar, Y Lin, X Su, DM Lin, E Patrick, ZG Han, JC Marioni, ...
Nature Methods 17 (8), 799-806, 2020
Mutational and transcriptomic landscapes of a rare human prostate basal cell carcinoma
X Su, Q Long, J Bo, Y Shi, LN Zhao, Y Lin, Q Luo, S Ghazanfar, C Zhang, ...
The Prostate 80 (6), 508-517, 2020
Systematic functional identification of cancer multi-drug resistance genes
MT Lau, S Ghazanfar, A Parkin, A Chou, JR Rouaen, JB Littleboy, ...
Genome biology 21 (1), 1-12, 2020
Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics
C Muus, MD Luecken, G Eraslan, L Sikkema, A Waghray, G Heimberg, ...
Nature medicine, 1-14, 2021
DCARS: differential correlation across ranked samples
S Ghazanfar, D Strbenac, JT Ormerod, JYH Yang, E Patrick
Bioinformatics, 1-7, 2018
SpatialExperiment: infrastructure for spatially resolved transcriptomics data in R using Bioconductor
D Righelli, LM Weber, HL Crowell, B Pardo, L Collado-Torres, ...
bioRxiv, 2021
Clonal evolution in liver cancer at single-cell and single-variant resolution
X Su, L Zhao, Y Shi, R Zhang, Q Long, S Bai, Q Luo, Y Lin, X Zou, ...
Journal of hematology & oncology 14 (1), 1-5, 2021
Diverse Routes toward Early Somites in the Mouse Embryo
C Guibentif, JA Griffiths, I Imaz-Rosshandler, S Ghazanfar, J Nichols, ...
Developmental cell 56 (1), 141-153. e6, 2021
Highly multiplexed spatially resolved gene expression profiling of mouse organogenesis
T Lohoff, S Ghazanfar, A Missarova, N Koulena, N Pierson, JA Griffiths, ...
bioRxiv, 2020
Genome-wide analysis in Drosophila reveals diet by gene interactions and uncovers diet-responsive genes
DE James, D Francis, S Ghazanfar, E Havula, JR Krycer, A Senior, ...
BioRxiv, 718304, 2020
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