Segui
Fabio Cumbo
Fabio Cumbo
Center for Computational Life Sciences, Lerner Research Institute, Cleveland Clinic
Email verificata su ccf.org - Home page
Titolo
Citata da
Citata da
Anno
Bioconda: sustainable and comprehensive software distribution for the life sciences
B Grüning, R Dale, A Sjödin, BA Chapman, J Rowe, CH Tomkins-Tinch, ...
Nature methods 15 (7), 475, 2018
7892018
Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0
F Asnicar, AM Thomas, F Beghini, C Mengoni, S Manara, P Manghi, ...
Nature communications 11 (1), 2500, 2020
3902020
Intestinal Akkermansia muciniphila predicts clinical response to PD-1 blockade in patients with advanced non-small-cell lung cancer
L Derosa, B Routy, AM Thomas, V Iebba, G Zalcman, S Friard, J Mazieres, ...
Nature medicine 28 (2), 315-324, 2022
2452022
Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome
E Pasolli, F De Filippis, IE Mauriello, F Cumbo, AM Walsh, J Leech, ...
Nature communications 11 (1), 2610, 2020
2132020
Extending and improving metagenomic taxonomic profiling with uncharacterized species using MetaPhlAn 4
A Blanco-Míguez, F Beghini, F Cumbo, LJ McIver, KN Thompson, M Zolfo, ...
Nature Biotechnology 41 (11), 1633-1644, 2023
1932023
The person-to-person transmission landscape of the gut and oral microbiomes
M Valles-Colomer, A Blanco-Míguez, P Manghi, F Asnicar, L Dubois, ...
Nature 614 (7946), 125-135, 2023
1272023
Variability of strain engraftment and predictability of microbiome composition after fecal microbiota transplantation across different diseases
G Ianiro, M Punčochář, N Karcher, S Porcari, F Armanini, F Asnicar, ...
Nature Medicine 28 (9), 1913-1923, 2022
942022
A collection of bacterial isolates from the pig intestine reveals functional and taxonomic diversity
D Wylensek, TCA Hitch, T Riedel, A Afrizal, N Kumar, E Wortmann, T Liu, ...
Nature communications 11 (1), 6389, 2020
942020
Genomic diversity and ecology of human-associated Akkermansia species in the gut microbiome revealed by extensive metagenomic assembly
N Karcher, E Nigro, M Punčochář, A Blanco-Míguez, M Ciciani, P Manghi, ...
Genome biology 22 (1), 209, 2021
772021
Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species
S Manara, F Asnicar, F Beghini, D Bazzani, F Cumbo, M Zolfo, E Nigro, ...
Genome biology 20, 1-16, 2019
552019
Classification of large DNA methylation datasets for identifying cancer drivers
F Celli, F Cumbo, E Weitschek
Big data research 13, 21-28, 2018
462018
GIANT: a cytoscape plugin for modular networks
F Cumbo, P Paci, D Santoni, L Di Paola, A Giuliani
PLoS One 9 (10), e105001, 2014
422014
TCGA2BED: extracting, extending, integrating, and querying The Cancer Genome Atlas
F Cumbo, G Fiscon, S Ceri, M Masseroli, E Weitschek
BMC bioinformatics 18, 1-9, 2017
402017
Population-level impacts of antibiotic usage on the human gut microbiome
K Lee, S Raguideau, K Sirén, F Asnicar, F Cumbo, F Hildebrand, ...
Nature Communications 14 (1), 1191, 2023
212023
Commensal Bifidobacterium Strains Enhance the Efficacy of Neo-Epitope Based Cancer Vaccines
M Tomasi, M Dalsass, F Beghini, I Zanella, E Caproni, L Fantappiè, ...
Vaccines 9 (11), 1356, 2021
162021
A brain-inspired hyperdimensional computing approach for classifying massive DNA methylation data of cancer
F Cumbo, E Cappelli, E Weitschek
Algorithms 13 (9), 233, 2020
122020
OpenGDC: unifying, modeling, integrating cancer genomic data and clinical metadata
E Cappelli, F Cumbo, A Bernasconi, A Canakoglu, S Ceri, M Masseroli, ...
Applied Sciences 10 (18), 6367, 2020
122020
Genomic data integration: A case study on next generation sequencing of cancer
E Weitschek, F Cumbo, E Cappelli, G Felici
2016 27th International Workshop on Database and Expert Systems Applications …, 2016
122016
Outer membrane vesicles from the gut microbiome contribute to tumor immunity by eliciting cross-reactive T cells
M Tomasi, E Caproni, M Benedet, I Zanella, S Giorgetta, M Dalsass, ...
Frontiers in Oncology 12, 912639, 2022
92022
IWTomics: testing high-resolution sequence-based ‘Omics’ data at multiple locations and scales
MA Cremona, A Pini, F Cumbo, KD Makova, F Chiaromonte, S Vantini
Bioinformatics 34 (13), 2289-2291, 2018
92018
Il sistema al momento non può eseguire l'operazione. Riprova più tardi.
Articoli 1–20