| A promoter-level mammalian expression atlas ARR Forrest, H Kawaji, M Rehli, JK Baillie, MJL De Hoon, V Haberle, ... Nature 507 (7493), 462-470, 2014 | 1693* | 2014 |
| Deep transcriptome profiling of mammalian stem cells supports a regulatory role for retrotransposons in pluripotency maintenance A Fort, K Hashimoto, D Yamada, M Salimullah, CA Keya, A Saxena, ... Nature genetics 46 (6), 558-566, 2014 | 311 | 2014 |
| FANTOM5 CAGE profiles of human and mouse samples S Noguchi, T Arakawa, S Fukuda, M Furuno, A Hasegawa, F Hori, ... Scientific data 4, 170112, 2017 | 231 | 2017 |
| Discovery and functional analysis of lncRNAs: methodologies to investigate an uncharacterized transcriptome K Kashi, L Henderson, A Bonetti, P Carninci Biochimica et Biophysica Acta (BBA)-Gene Regulatory Mechanisms 1859 (1), 3-15, 2016 | 228 | 2016 |
| The β-amyloid precursor protein functions as a cytosolic anchoring site that prevents Fe65 nuclear translocation G Minopoli, P de Candia, A Bonetti, R Faraonio, N Zambrano, T Russo Journal of Biological Chemistry 276 (9), 6545-6550, 2001 | 181 | 2001 |
| Targeted cancer immunotherapy with oncolytic adenovirus coding for a fully human monoclonal antibody specific for CTLA-4 JD Dias, O Hemminki, I Diaconu, M Hirvinen, A Bonetti, K Guse, ... Gene therapy 19 (10), 988-998, 2012 | 175 | 2012 |
| Interferon regulatory factor 5 (IRF5) gene variants are associated with multiple sclerosis in three distinct populations G Kristjansdottir, JK Sandling, A Bonetti, IM Roos, L Milani, C Wang, ... Journal of medical genetics 45 (6), 362-369, 2008 | 174 | 2008 |
| Functional Annotation of Human Long Non-Coding RNAs via Molecular Phenotyping J Ramilowski, CW Yip, S Agrawal, JC Chang, Y Ciani, IV Kulakovskiy, ... bioRxiv, 700864, 2019 | 134 | 2019 |
| RADICL-seq identifies general and cell type–specific principles of genome-wide RNA-chromatin interactions A Bonetti, F Agostini, AM Suzuki, K Hashimoto, G Pascarella, J Gimenez, ... Nature communications 11 (1), 1-14, 2020 | 117 | 2020 |
| CAGE profiling of ncRNAs in hepatocellular carcinoma reveals widespread activation of retroviral LTR promoters in virus-induced tumors K Hashimoto, AM Suzuki, A Dos Santos, C Desterke, A Collino, S Ghisletti, ... Genome research 25 (12), 1812-1824, 2015 | 56 | 2015 |
| Recombination of repeat elements generates somatic complexity in human genomes G Pascarella, CC Hon, K Hashimoto, A Busch, J Luginbühl, C Parr, ... Cell 185 (16), 3025-3040. e6, 2022 | 36 | 2022 |
| From bench to bedside: The long journey of long non-coding RNAs A Bonetti, P Carninci Current Opinion in Systems Biology 3, 119-124, 2017 | 26 | 2017 |
| A follow-up study of chromosome 19q13 in multiple sclerosis susceptibility A Bonetti, K Koivisto, T Pirttilä, I Elovaara, M Reunanen, M Laaksonen, ... Journal of neuroimmunology 208 (1-2), 119-124, 2009 | 26 | 2009 |
| A two-stage study on multiple sclerosis susceptibility and chromosome 2q33 A Bonetti, K Reunanen, S Finnilä, K Koivisto, J Wikström, ML Sumelahti, ... Genes & Immunity 5 (2), 142-146, 2004 | 22 | 2004 |
| Birth, coming of age and death: The intriguing life of long noncoding RNAs G Castelo-Branco, A Bonetti Seminars in cell & developmental biology 79, 143-152, 2018 | 17 | 2018 |
| Multiple sclerosis in G: genes and geography P Tienari, A Bonetti, H Pihlaja, KP Saastamoinen, T Rantamäki Clinical neurology and neurosurgery 108 (3), 223-226, 2006 | 15 | 2006 |
| A universal model of RNA. DNA: DNA triplex formation accurately predicts genome-wide RNA–DNA interactions T Warwick, S Seredinski, NM Krause, JK Bains, L Althaus, JA Oo, ... Briefings in bioinformatics 23 (6), bbac445, 2022 | 7 | 2022 |
| Characterization of novel transcripts of human papillomavirus type 16 using cap analysis gene expression technology A Taguchi, K Nagasaka, K Kawana, K Hashimoto, R Kusumoto-Matsuo, ... Journal of virology 89 (4), 2448-2452, 2015 | 6 | 2015 |
| Structure by sequencing: discovery of hidden messages in the noncoding RNA fraction A Bonetti, P Carninci Molecular cell 48 (2), 153-155, 2012 | 5 | 2012 |
| The New Frontier of Functional Genomics: From Chromatin Architecture and Noncoding RNAs to Therapeutic Targets N Papanicolaou, A Bonetti SLAS DISCOVERY: Advancing the Science of Drug Discovery, 2472555220926158, 2020 | 4 | 2020 |
