Topologically associating domains are stable units of replication-timing regulation BD Pope, T Ryba, V Dileep, F Yue, W Wu, O Denas, DL Vera, Y Wang, ... Nature 515 (7527), 402-405, 2014 | 919 | 2014 |
Fine-scale chromatin interaction maps reveal the cis-regulatory landscape of human lincRNA genes W Ma, F Ay, C Lee, G Gulsoy, X Deng, S Cook, J Hesson, C Cavanaugh, ... Nature methods 12 (1), 71-78, 2015 | 213 | 2015 |
Using DNase Hi-C techniques to map global and local three-dimensional genome architecture at high resolution W Ma, F Ay, C Lee, G Gulsoy, X Deng, S Cook, J Hesson, C Cavanaugh, ... Methods 142, 59-73, 2018 | 31 | 2018 |
Profiling the long noncoding RNA interaction network in the regulatory elements of target genes by chromatin in situ reverse transcription sequencing S Zhang, Y Wang, L Jia, X Wen, Z Du, C Wang, Y Hao, D Yu, L Zhou, ... Genome Research 29 (9), 1521-1532, 2019 | 28 | 2019 |
Chromatin lncRNA Platr10 controls stem cell pluripotency by coordinating an intrachromosomal regulatory network Z Du, X Wen, Y Wang, L Jia, S Zhang, Y Liu, L Zhou, H Li, W Yang, ... Genome Biology 22, 1-29, 2021 | 15 | 2021 |
RINQ: Reference-based indexing for network queries G Gülsoy, T Kahveci Bioinformatics 27 (13), i149-i158, 2011 | 15 | 2011 |
Topac: alignment of gene regulatory networks using topology-aware coloring G Guelsoy, B Gandhi, T Kahveci Journal of bioinformatics and computational biology 10 (01), 1240001, 2012 | 14 | 2012 |
HIDEN: Hierarchical decomposition of regulatory networks G Gulsoy, N Bandhyopadhyay, T Kahveci BMC bioinformatics 13 (1), 250, 2012 | 13 | 2012 |
Topology aware coloring of gene regulatory networks G Gülsoy, B Gandhi, T Kahveci Proceedings of the 2nd ACM Conference on Bioinformatics, Computational …, 2011 | 5 | 2011 |
Finding steady states of large scale regulatory networks through partitioning F Ay, G Gulsoy, T Kahveci 2010 IEEE International Workshop on Genomic Signal Processing and Statistics …, 2010 | 5 | 2010 |
Mining Biological Networks for Similar Patterns F Ay, G Gülsoy, T Kahveci Data Mining: Foundations and Intelligent Paradigms: Volume 3: Medical …, 2012 | 2 | 2012 |
Author Correction: chromatin lncRNA Platr10 controls stem cell pluripotency by coordinating an intrachromosomal regulatory network Z Du, X Wen, Y Wang, L Jia, S Zhang, Y Liu, L Zhou, H Li, W Yang, ... Genome Biology 22, 2021 | 1 | 2021 |
Inferring gene functions from metabolic reactions G Gülsoy, T Kahveci Proceedings 2012 IEEE International Workshop on Genomic Signal Processing …, 2012 | 1 | 2012 |
Chapter 4: Indexing for Similarity Queries on Biological Networks G Gülsoy, MM Hasan, Y Kavurucu, T Kahveci Biological Data Mining and its Applications in Healthcare, 105-122, 2014 | | 2014 |
Querying Large Biological Network Datasets G Gulsoy, T Kahveci University of Florida, 2013 | | 2013 |