|A viral microRNA functions as an orthologue of cellular miR-155|
E Gottwein, N Mukherjee, C Sachse, C Frenzel, WH Majoros, JTA Chi, ...
Nature 450 (7172), 1096-1099, 2007
|Integrative regulatory mapping indicates that the RNA-binding protein HuR couples pre-mRNA processing and mRNA stability|
N Mukherjee, DL Corcoran, JD Nusbaum, DW Reid, S Georgiev, ...
Molecular cell 43 (3), 327-339, 2011
|FMRP targets distinct mRNA sequence elements to regulate protein expression|
M Ascano, N Mukherjee, P Bandaru, JB Miller, JD Nusbaum, DL Corcoran, ...
Nature 492 (7429), 382-386, 2012
|PARalyzer: definition of RNA binding sites from PAR-CLIP short-read sequence data|
DL Corcoran, S Georgiev, N Mukherjee, E Gottwein, RL Skalsky, ...
Genome biology 12 (8), 1-16, 2011
|Viral microRNA targetome of KSHV-infected primary effusion lymphoma cell lines|
E Gottwein, DL Corcoran, N Mukherjee, RL Skalsky, M Hafner, ...
Cell host & microbe 10 (5), 515-526, 2011
|Detecting actively translated open reading frames in ribosome profiling data|
L Calviello, N Mukherjee, E Wyler, H Zauber, A Hirsekorn, M Selbach, ...
Nature methods 13 (2), 165-170, 2016
|Ribonomic analysis of human Pum1 reveals cis-trans conservation across species despite evolution of diverse mRNA target sets|
AR Morris, N Mukherjee, JD Keene
Molecular and cellular biology 28 (12), 4093-4103, 2008
|Radiation enhances the invasive potential of primary glioblastoma cells via activation of the Rho signaling pathway|
GG Zhai, R Malhotra, M Delaney, D Latham, U Nestler, M Zhang, ...
Journal of neuro-oncology 76 (3), 227-237, 2006
|Adenovirus‐mediated inhibition of survivin expression sensitizes human prostate cancer cells to paclitaxel in vitro and in vivo|
M Zhang, N Mukherjee, RS Bermudez, DE Latham, MA Delaney, ...
The Prostate 64 (3), 293-302, 2005
|Systematic analysis of posttranscriptional gene expression|
AR Morris, N Mukherjee, JD Keene
Wiley Interdisciplinary Reviews: Systems Biology and Medicine 2 (2), 162-180, 2010
|Coordinated posttranscriptional mRNA population dynamics during T‐cell activation|
N Mukherjee, PJ Lager, MB Friedersdorf, MA Thompson, JD Keene
Molecular systems biology 5 (1), 288, 2009
|Global target mRNA specification and regulation by the RNA-binding protein ZFP36|
N Mukherjee, NC Jacobs, M Hafner, EA Kennington, JD Nusbaum, ...
Genome biology 15 (1), 1-16, 2014
|Integrative classification of human coding and noncoding genes through RNA metabolism profiles|
N Mukherjee, L Calviello, A Hirsekorn, S de Pretis, M Pelizzola, U Ohler
Nature structural & molecular biology 24 (1), 86, 2017
|Control of thymic T cell maturation, deletion and egress by the RNA-binding protein HuR|
O Papadaki, S Milatos, S Grammenoudi, N Mukherjee, JD Keene, ...
The Journal of Immunology 182 (11), 6779-6788, 2009
|MicroRNA target site identification by integrating sequence and binding information|
WH Majoros, P Lekprasert, N Mukherjee, RL Skalsky, DL Corcoran, ...
Nature methods 10 (7), 630, 2013
|Integrated detection of natural antisense transcripts using strand-specific RNA sequencing data|
S Li, LM Liberman, N Mukherjee, PN Benfey, U Ohler
Genome research 23 (10), 1730-1739, 2013
|Delivery of therapeutics targeting the mRNA-binding protein HuR using 3DNA nanocarriers suppresses ovarian tumor growth|
YH Huang, W Peng, N Furuuchi, J Gerhart, K Rhodes, N Mukherjee, ...
Cancer research 76 (6), 1549-1559, 2016
|Tissue type-specific expression of the dsRNA-binding protein 76 and genome-wide elucidation of its target mRNAs|
V Neplioueva, EY Dobrikova, N Mukherjee, JD Keene, M Gromeier
PLoS One 5 (7), e11710, 2010
|Identification of the RNA recognition element of the RBPMS family of RNA-binding proteins and their transcriptome-wide mRNA targets|
TA Farazi, CS Leonhardt, N Mukherjee, A Mihailovic, S Li, KEA Max, ...
Rna 20 (7), 1090-1102, 2014
|A STAT3 gene expression signature in gliomas is associated with a poor prognosis|
JV Alvarez, N Mukherjee, A Chakravarti, P Robe, G Zhai, A Chakladar, ...
Translational oncogenomics 2, 99, 2007