Segui
Shahab Sarmashghi
Shahab Sarmashghi
Broad Institute of MIT and Harvard
Email verificata su broadinstitute.org
Titolo
Citata da
Citata da
Anno
Skmer: assembly-free and alignment-free sample identification using genome skims
S Sarmashghi, K Bohmann, MT P Gilbert, V Bafna, S Mirarab
Genome biology 20 (1), 1-20, 2019
86*2019
APPLES: scalable distance-based phylogenetic placement with or without alignments
M Balaban, S Sarmashghi, S Mirarab
Systematic Biology 69 (3), 566-578, 2020
602020
Cancer aneuploidies are shaped primarily by effects on tumour fitness
J Shih, S Sarmashghi, N Zhakula-Kostadinova, S Zhang, Y Georgis, ...
Nature 619 (7971), 793-800, 2023
242023
Estimating repeat spectra and genome length from low-coverage genome skims with RESPECT
S Sarmashghi, M Balaban, E Rachtman, B Touri, S Mirarab, V Bafna
PLoS computational biology 17 (11), e1009449, 2021
212021
Computing the statistical significance of overlap between genome annotations with iStat
S Sarmashghi, V Bafna
Cell systems 8 (6), 523-529. e4, 2019
72019
Uncertainty quantification using subsampling for assembly-free estimates of genomic distance and phylogenetic relationships
E Rachtman, S Sarmashghi, V Bafna, S Mirarab
International Conference on Research in Computational Molecular Biology, 366-368, 2022
32022
Quantifying the uncertainty of assembly-free genome-wide distance estimates and phylogenetic relationships using subsampling
E Rachtman, S Sarmashghi, V Bafna, S Mirarab
Cell systems 13 (10), 817-829. e3, 2022
22022
Fastvifi: fast and accurate detection of (hybrid) viral DNA and RNA
S Javadzadeh, U Rajkumar, N Nguyen, S Sarmashghi, J Luebeck, ...
NAR Genomics and Bioinformatics 4 (2), lqac032, 2022
22022
Statistical and Algorithmic Methods to Analyze Genome Sequencing Data
S Sarmashghi
University of California, San Diego, 2021
2021
Assembly-free and alignment-free sample identification using genome skims
S Sarmashghi, K Bohmann, MTP Gilbert, V Bafna, S Mirarab
bioRxiv, 230409, 2018
2018
Novel statistical methods to leverage low-coverage whole-genome sequencing data in biodiversity studies
S Sarmashghi, M Balaban, E Rachtman, S Mirarab, V Bafna
2020 ESA Annual Meeting (August 3-6), 0
Il sistema al momento non può eseguire l'operazione. Riprova più tardi.
Articoli 1–11