Antoine Limasset
Antoine Limasset
CNRS, Université de Lille, Laboratoire CRIStAL, Equipe Bonsai
Verified email at univ-lille.fr - Homepage
Title
Cited by
Cited by
Year
On the representation of de Bruijn graphs
R Chikhi, A Limasset, S Jackman, JT Simpson, P Medvedev
International conference on Research in computational molecular biology, 35-55, 2014
1352014
Compacting de Bruijn graphs from sequencing data quickly and in low memory
R Chikhi, A Limasset, P Medvedev
Bioinformatics 32 (12), i201-i208, 2016
1292016
Read mapping on de Bruijn graphs
A Limasset, B Cazaux, E Rivals, P Peterlongo
BMC bioinformatics 17 (1), 1-12, 2016
702016
Fast and scalable minimal perfect hashing for massive key sets
A Limasset, G Rizk, R Chikhi, P Peterlongo
16th International Symposium on Experimental Algorithms, 2017
572017
A resource-frugal probabilistic dictionary and applications in bioinformatics
C Marchet, L Lecompte, A Limasset, L Bittner, P Peterlongo
Discrete Applied Mathematics 274, 92-102, 2020
22*2020
Toward perfect reads: self-correction of short reads via mapping on de Bruijn graphs
A Limasset, JF Flot, P Peterlongo
Bioinformatics 36 (5), 1374-1381, 2020
192020
Scalable long read self-correction and assembly polishing with multiple sequence alignment
P Morisse, C Marchet, A Limasset, T Lecroq, A Lefebvre
Scientific reports 11 (1), 1-13, 2021
14*2021
STRONG: metagenomics strain resolution on assembly graphs
C Quince, S Nurk, S Raguideau, R James, OS Soyer, JK Summers, ...
Genome biology 22 (1), 1-34, 2021
9*2021
BLight: Efficient exact associative structure for k-mers
C Marchet, M Kerbiriou, A Limasset
Bioinformatics, 2021
8*2021
ELECTOR: evaluator for long reads correction methods
C Marchet, P Morisse, L Lecompte, A Lefebvre, T Lecroq, P Peterlongo, ...
NAR Genomics and Bioinformatics 2 (1), lqz015, 2020
82020
Chromosome-level genome assembly reveals homologous chromosomes and recombination in asexual rotifer Adineta vaga
P Simion, J Narayan, A Houtain, A Derzelle, L Baudry, E Nicolas, R Arora, ...
Science Advances 7 (41), eabg4216, 2021
6*2021
Novel approaches for the exploitation of high throughput sequencing data
A Limasset
Université Rennes 1, 2017
4*2017
Critical Assessment of Metagenome Interpretation-the second round of challenges
F Meyer, A Fritz, ZL Deng, D Koslicki, A Gurevich, G Robertson, M Alser, ...
bioRxiv, 2021
12021
Assembly improvements by read mapping and phasing
A Limasset
Ph. D. dissertation, IRISA, Inria Rennes, 2014
12014
Efficient dynamic associative dictionary for large k-mer sets
Y Dufresne, C Marchet, R Chikhi, A Limasset
BMC BIOINFORMATICS 21 (SUPPL 20), 2020
2020
Million sequences indexing
A Limasset
BMC BIOINFORMATICS 20, 2019
2019
Vers des sequences parfaites: correction de donnée de sequencage de seconde generation via alignement sur graphe de De Bruijn
A Limasset, JF Flot, P Peterlongo
Oxford University Press (OUP), 2019
2019
Read correction for non-uniform coverages
C Marchet, Y Dufresne, A Limasset
bioRxiv, 673624, 2019
2019
ELECTOR: EvaLuation of Error Correction Tools for lOng Reads
L Lecompte, C Marchet, P Morisse, A Limasset, P Peterlongo, A Lefebvre, ...
JOBIM 2018-Journées Ouvertes Biologie, Informatique et Mathématiques, 1-2, 2018
2018
Indexing de Bruijn graph with minimizers
A Limasset, R Chikhi, R Patro, F Fatemeh
MACADAM a user-friendly MetAboliC pAthway DAtabase for complex Microbial …, 2018
2018
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