Andrea Pagnani - Google Scholar

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	All	Since 2015
Citations	4515	2904
h-index	29	23
i10-index	44	31

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Co-authors

Riccardo Zecchinaprofessor, theoretical physics, Bocconi UniversityVerified email at unibocconi.it
Martin WeigtSorbonne Université Paris (former Université Pierre & Marie Curie)Verified email at upmc.fr
Alfredo BraunsteinDISAT, Politecnico di TorinoVerified email at polito.it
Giorgio ParisiProfessor of Theoretical Physics, Rome I University "La Sapienza"Verified email at roma1.infn.it
Chris SanderDana-Farber Cancer Institute, Harvard Medical School, Broad Institute, Memorial Sloan KetteringVerified email at sanderlab.org
Debora MarksSystems Biology, Harvard Medical SchoolVerified email at hms.harvard.edu
Roberto MuletFacultad de Fisica, Universidad de la HabanaVerified email at fisica.uh.cu
Enzo MarinariProfessor of Theoretical Physics, Sapienza Università di RomaVerified email at uniroma1.it
Carlo BaldassiBocconi University; INFNVerified email at unibocconi.it
Thomas A. HopfScientific ConsultantVerified email at thomashopf.com
Lucy ColwellUniversity of CambridgeVerified email at cam.ac.uk
Bryan J. LuntPhD Candidate, University of Illinois as Urbana-ChampaignVerified email at illinois.edu
Faruck MorcosUniversity of Texas at Dallas - Dept. Biological SciencesVerified email at utdallas.edu
Terence HwaU. C. San DiegoVerified email at ucsd.edu
Christoph FeinauerBocconi UniversityVerified email at unibocconi.it
Jose OnuchicCTBP Rice UniversityVerified email at rice.edu
Paolo ProveroAssociate Professor, University of TurinVerified email at unito.it
Federico Ricci-TersenghiProfessor of Theoretical Physics, "La Sapienza" University, RomaVerified email at roma1.infn.it
Marco ZamparoPolitecnico di TorinoVerified email at polito.it
Pier Paolo PandolfiDirector, Cancer Center and Cancer Research Institute, Beth Israel Deaconess Medical CenterVerified email at bidmc.harvard.edu

Andrea Pagnani

Professor at DISAT - Politecnico di Torino, and PI at the IIGM

Verified email at polito.it - Homepage

Statistical physics combinatorial optimization bioinformatics biological modeling statistical inference


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Direct-coupling analysis of residue coevolution captures native contacts across many protein families F Morcos, A Pagnani, B Lunt, A Bertolino, DS Marks, C Sander, ... Proceedings of the National Academy of Sciences 108 (49), E1293-E1301, 2011	883	2011
Protein 3D structure computed from evolutionary sequence variation DS Marks, LJ Colwell, R Sheridan, TA Hopf, A Pagnani, R Zecchina, ... PLoS One 6 (12), e28766, 2011	811	2011
A critical assessment of Mus musculus gene function prediction using integrated genomic evidence L Peña-Castillo, M Tasan, CL Myers, H Lee, T Joshi, C Zhang, Y Guan, ... Genome biology 9 (1), S2, 2008	269	2008
Integrated transcriptional and competitive endogenous RNA networks are cross-regulated in permissive molecular environments U Ala, FA Karreth, C Bosia, A Pagnani, R Taulli, V Léopold, Y Tay, ... Proceedings of the National Academy of Sciences 110 (18), 7154-7159, 2013	233	2013
Coloring random graphs R Mulet, A Pagnani, M Weigt, R Zecchina Physical review letters 89 (26), 268701, 2002	220	2002
Critical exponents of the KPZ equation via multi-surface coding numerical simulations E Marinari, A Pagnani, G Parisi Journal of Physics A: Mathematical and General 33 (46), 8181, 2000	146	2000
Genome-wide analysis identifies a functional association of Tet1 and Polycomb repressive complex 2 in mouse embryonic stem cells F Neri, D Incarnato, A Krepelova, S Rapelli, A Pagnani, R Zecchina, ... Genome biology 14 (8), R91, 2013	122	2013
Perturbation biology: inferring signaling networks in cellular systems EJ Molinelli, A Korkut, W Wang, ML Miller, NP Gauthier, X Jing, P Kaushik, ... PLoS computational biology 9 (12), e1003290, 2013	117	2013
Modelling competing endogenous RNA networks C Bosia, A Pagnani, R Zecchina PloS one 8 (6), e66609, 2013	109	2013
Polynomial iterative algorithms for coloring and analyzing random graphs A Braunstein, R Mulet, A Pagnani, M Weigt, R Zecchina Physical Review E 68 (3), 036702, 2003	108	2003
Width distributions and the upper critical dimension of Kardar-Parisi-Zhang interfaces E Marinari, A Pagnani, G Parisi, Z Rácz Physical review E 65 (2), 026136, 2002	106	2002
Fast and accurate multivariate Gaussian modeling of protein families: Predicting residue contacts and protein-interaction partners C Baldassi, M Zamparo, C Feinauer, A Procaccini, R Zecchina, M Weigt, ... PloS one 9 (3), e92721, 2014	103	2014
Simultaneous reconstruction of multiple signaling pathways via the prize-collecting Steiner forest problem N Tuncbag, A Braunstein, A Pagnani, SSC Huang, J Chayes, C Borgs, ... Journal of computational biology 20 (2), 124-136, 2013	90	2013
Glassy transition in a disordered model for the RNA secondary structure A Pagnani, G Parisi, F Ricci-Tersenghi Physical review letters 84 (9), 2026, 2000	77	2000
Improving contact prediction along three dimensions C Feinauer, MJ Skwark, A Pagnani, E Aurell PLoS computational biology 10 (10), e1003847, 2014	76	2014
Simultaneous identification of specifically interacting paralogs and interprotein contacts by direct coupling analysis T Gueudré, C Baldassi, M Zamparo, M Weigt, A Pagnani Proceedings of the National Academy of Sciences 113 (43), 12186-12191, 2016	71	2016
Scalings of domain wall energies in two dimensional Ising spin glasses C Amoruso, E Marinari, OC Martin, A Pagnani Physical review letters 91 (8), 087201, 2003	66	2003
Estimating the size of the solution space of metabolic networks A Braunstein, R Mulet, A Pagnani BMC bioinformatics 9 (1), 240, 2008	64	2008
Threshold values, stability analysis, and high-q asymptotics for the coloring problem on random graphs F Krząkała, A Pagnani, M Weigt Physical Review E 70 (4), 046705, 2004	64	2004
Inference of sparse combinatorial-control networks from gene-expression data: a message passing approach M Bailly-Bechet, A Braunstein, A Pagnani, M Weigt, R Zecchina BMC bioinformatics 11 (1), 355, 2010	51	2010

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